PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g02310
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 300aa    MW: 34741.4 Da    PI: 10.3284
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g02310genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-175499147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ 
        Tp7g02310 54 RGHWKPSEDFKLKELVATFGPQNWNYIANKMQ-GRTGKSCRLRWFNQ 99
                     899*****************************.***********996 PP
2Myb_DNA-binding521.6e-16107150247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a++++G++ W++Ia+ ++ gRt++  k++w+ +
        Tp7g02310 107 RAFSDEEEEKLLAAHRKFGNK-WSLIAKLFP-GRTDNAMKNHWHVL 150
                      689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.80149100IPR017930Myb domain
SMARTSM007173.8E-1253102IPR001005SANT/Myb domain
PfamPF002491.8E-155499IPR001005SANT/Myb domain
SuperFamilySSF466895.59E-2854147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-2555107IPR009057Homeodomain-like
CDDcd001671.03E-105798No hitNo description
PROSITE profilePS5129426.326101155IPR017930Myb domain
SMARTSM007171.9E-13105153IPR001005SANT/Myb domain
PfamPF002495.6E-14107150IPR001005SANT/Myb domain
CDDcd001671.49E-10108151No hitNo description
Gene3DG3DSA:1.10.10.603.5E-21108155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDFPKYPCDV FHCRVPFNGF GENNALSLRE LCNKRRKMHQ ENNKKQKLSR VCSRGHWKPS  60
EDFKLKELVA TFGPQNWNYI ANKMQGRTGK SCRLRWFNQL DPRIIKRAFS DEEEEKLLAA  120
HRKFGNKWSL IAKLFPGRTD NAMKNHWHVL MSRKLRKQST SYSRSRKRHT PAPDKSLNLQ  180
QTFNLFPGSV GGESTEFNNY SWKMLKEEST NLKAQYLQEE YCSSRMPMQY LGHHHHHFST  240
FPADSSALLT PQVSIFQPSL SSSSSTSSLS TSEAENAMVA RYYETSKPPR FIDFLGVGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-31541554105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g02310
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463037.11e-155PREDICTED: transcription factor MYB59-like
TrEMBLA0A3P6CD841e-152A0A3P6CD84_BRACM; Uncharacterized protein
STRINGA0A087GAL31e-129(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-118myb domain protein 110