PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g02250
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 325aa    MW: 36978.2 Da    PI: 9.1057
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g02250genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.6e-52171432128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
                 pGfrFhPtdeelv++yLk+kv +++l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++++s  +++ +
  Tp7g02250  17 LPGFRFHPTDEELVSFYLKRKVLQRSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLdSTRCI 115
                69**************************9.89***************8778899**************************************9856677* PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                glkk+Lvfy+gra kg+ktdW+mhe+rl
  Tp7g02250 116 GLKKSLVFYRGRAAKGVKTDWMMHEFRL 143
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-5815185IPR003441NAC domain
PROSITE profilePS5100556.25416185IPR003441NAC domain
PfamPF023651.4E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDDEESNNVE RFDDVVLPGF RFHPTDEELV SFYLKRKVLQ RSLPFELIKK VDIYKYDPWD  60
LPKLAAMGEK EWYFYCPRDR KYRNSTRPNR VTGGGFWKAT GTDRPIYSLD STRCIGLKKS  120
LVFYRGRAAK GVKTDWMMHE FRLPSLSDSH HSAYPNYNNK KQHHNSNNKE IPSNDAWAIC  180
RIFKKTNSVS SSQRSIPQSR LYPVIPETNQ YNSHSQTATL FASTDVFSHI ATRQNLISSP  240
VDEPASFTES AAAYFASQML GVPYNTARNS GTGDALFLSN NENNYFNNLA GSSTHELPNV  300
RSMVESGFGT TMASDMSAKS YSTNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-521818817171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g02250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-118AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-118CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankHG9686031e-118HG968603.1 Arabidopsis thaliana T-DNA flanking sequence, clone GK-027D08-028756.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589257.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9FIW50.0NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A078FF980.0A0A078FF98_BRANA; BnaC06g12700D protein
TrEMBLA0A0D3CT030.0A0A0D3CT03_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FTM90.0A0A3P6FTM9_BRAOL; Uncharacterized protein
STRINGBo6g064260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-180NAC domain containing protein 94