PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g01690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 156aa MW: 18292.2 Da PI: 9.6563 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.7 | 2.7e-15 | 19 | 64 | 11 | 56 |
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ Le+ Fe+++++ +++ eLAkklgL++rqV +WF Nr+a+ k Tp7g01690 19 EVNLLEKSFEEENKLEPKRKIELAKKLGLPQRQVAIWFLNRKARFK 64 6789****************************************88 PP | |||||||
2 | HD-ZIP_I/II | 103 | 2.5e-33 | 18 | 102 | 9 | 93 |
HD-ZIP_I/II 9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 v+lLE+sFeee+kLep+rK ela++Lgl +rqva+WF nr+AR+k k++E+dy+ Lk++yd+l +++e++ +e+e+L++++++ Tp7g01690 18 SEVNLLEKSFEEENKLEPKRKIELAKKLGLPQRQVAIWFLNRKARFKFKKIERDYDILKACYDSLLAKHESVISENEKLKSKVST 102 5699****************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.4E-8 | 12 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.16E-10 | 17 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-16 | 18 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.21E-14 | 18 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.2E-12 | 19 | 64 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 14.171 | 19 | 66 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.5E-5 | 37 | 46 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 41 | 64 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.5E-5 | 46 | 62 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.0E-16 | 66 | 107 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MIKVTLCFIF RNFKKIDSEV NLLEKSFEEE NKLEPKRKIE LAKKLGLPQR QVAIWFLNRK 60 ARFKFKKIER DYDILKACYD SLLAKHESVI SENEKLKSKV STLTEMLLPA TNQTQRKFQD 120 KLNSKGDETM TSSTTLLPLA NDDYLTNIDE SLGWWV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g01690 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232548 | 1e-90 | AC232548.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010J09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024014666.1 | 2e-79 | homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q02283 | 1e-33 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1J3EYU0 | 3e-79 | A0A1J3EYU0_NOCCA; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1J3HX77 | 4e-79 | A0A1J3HX77_NOCCA; Homeobox-leucine zipper protein HAT5 | ||||
STRING | A0A087GTD2 | 1e-77 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16382 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 6e-36 | homeobox 1 |
Publications ? help Back to Top | |||
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