PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp7g00200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 405aa MW: 44859.8 Da PI: 4.9549 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 365.2 | 9.4e-112 | 45 | 400 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lLl+cAe v++++l++a++lL+++se++sp +++ +R++ayf++AL+ar+ + s l++a ++ + +s++ +aal++f+ vsP++kfsh+taNqa Tp7g00200 45 LSLLLQCAEYVATDHLREASTLLSEISEICSPFDSSPERVVAYFAQALQARVIS--SYLSAASETPLLTVFQSQKIFAALQTFNSVSPLIKFSHFTANQA 142 689***************************************************..5555555555555567999999********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 I +a+++++ vHiiD+d++qGlQWp L++ LasRp++ s+RiTg+gs s++ l +tg+rLa+fA++l +pfef+++ k + +++++L ++pgEa Tp7g00200 143 IFQALDTDDSVHIIDLDVMQGLQWPGLFHILASRPRKLRSIRITGFGS----SSDLLASTGRRLADFAASLSLPFEFHPIEGKIGNLIDPSQLGTRPGEA 238 ************************************************....9**************************988888899************ PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 ++V+++ hrl+d ++s + +L+++++l+P+++++veqe+++ +++ Fl rf+eal+yysalfd+l +l++es er +vE+++l+ ei+n+v Tp7g00200 239 VVVHWMQ--HRLYDVTGSDLD----TLEIIRRLKPNLITMVEQELSYddGGSCFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQVVLATEIRNIVG 332 ******9..****99999999....*******************998657789**********************************************8 PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++ +++W+e l+++GF++v+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++SaW+ Tp7g00200 333 GKRRR-------MMRWKEELSRVGFRSVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAWQ 400 77665.......889***********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 51.91 | 18 | 380 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-109 | 45 | 400 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 405 aa Download sequence Send to blast |
MTAKRLDRGY PSSGDLSSVK RHKDLDFPDE TTPEDDDDGG AINLLSLLLQ CAEYVATDHL 60 REASTLLSEI SEICSPFDSS PERVVAYFAQ ALQARVISSY LSAASETPLL TVFQSQKIFA 120 ALQTFNSVSP LIKFSHFTAN QAIFQALDTD DSVHIIDLDV MQGLQWPGLF HILASRPRKL 180 RSIRITGFGS SSDLLASTGR RLADFAASLS LPFEFHPIEG KIGNLIDPSQ LGTRPGEAVV 240 VHWMQHRLYD VTGSDLDTLE IIRRLKPNLI TMVEQELSYD DGGSCFLGRF VEALHYYSAL 300 FDALGDGLGE ESGERFTVEQ VVLATEIRNI VGGKRRRMMR WKEELSRVGF RSVSLRGNPA 360 TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWQ SQPSD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-141 | 28 | 399 | 2 | 377 | Protein SCARECROW |
5b3h_D | 1e-141 | 28 | 399 | 2 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp7g00200 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353382 | 0.0 | AK353382.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-L03. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405294.1 | 0.0 | scarecrow-like protein 23 | ||||
Swissprot | Q9FHZ1 | 0.0 | SCL23_ARATH; Scarecrow-like protein 23 | ||||
TrEMBL | A0A1J3HSI8 | 0.0 | A0A1J3HSI8_NOCCA; Scarecrow-like protein 23 | ||||
STRING | XP_006405294.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12512 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41920.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|