PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g41100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 26373.4 Da PI: 7.0182 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k Fs++ L H++ H Tp6g41100 83 FACTFCKKEFSTSQALGGHQNAH 105 78******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.65E-6 | 80 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-5 | 81 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.1E-6 | 82 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.655 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MELNLTTPTT CSSSSISSSS HEMGFLTDTK GKMKEKIAAE AAIETPRLEF SFLFNNDKIR 60 NSGFGVLEDE AEGTKKEAKA RVFACTFCKK EFSTSQALGG HQNAHKQERS LAKRRKEIEI 120 NYPGLSFYSQ YPPPSGVSYS SPYDLGVRYN PNVGKSKAYP LNIFRCRLGY RGLNINSHIP 180 LLSNLSCQKT DDFSKNLISN LEANDSHVIK EEQGEKQDQS DTDSYQDSEI DLSLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g41100 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009125391.1 | 1e-131 | PREDICTED: uncharacterized protein LOC103850401 | ||||
TrEMBL | A0A398AC28 | 1e-130 | A0A398AC28_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EJE8 | 1e-130 | M4EJE8_BRARP; Uncharacterized protein | ||||
STRING | Bra028914.1-P | 1e-131 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8738 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 2e-58 | C2H2 family protein |