PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g40050

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Dof

Protein Properties

Length: 419aa MW: 44146.3 Da PI: 9.3388

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g40050	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.4e-38	92	151	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+++ Tp6g40050 92 ETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKSCRRYWTRGGALRSVPVGGGCRRNKRTK 151 6789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-36	79	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.8E-32	94	149	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	95	149	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	97	133	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MVFSSFPNYP DSSNWQQQHQ PITTTVGFTG NNNISPQFLP HHPLPPQPQQ TPPPLHHNGN 60 GGGSGGPGGP GGLIRPGSMA ERARLANIPL PETALKCPRC DSTNTKFCYF NNYSLTQPRH 120 FCKSCRRYWT RGGALRSVPV GGGCRRNKRT KNTSGGGGGG GGSSSSGNSK SQDSTTSNDQ 180 YHHRNMVNNQ MGPPSSSTSL SSLLSSYNAG LIPGHDHNSN NNNILGLGSS LPPLKLMPPL 240 DFTDNFSLQY GAASAPSYHI GGGSSGGSGG GGASTLLTGF DQWRFPATHH QLPLLGGLDN 300 SSSSGLYPFD HQNQTGMEQQ NPGYGLVTGS GQYRPKNIFH NLVSSSSSAS SAMVTATASQ 360 LASVKMEDSN NQLNMSRQLF GNEQQLWNIH GTAASTAAAT TSSWSDVSNN FSSSSTSNI

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MVFSSFPNYP DSSNWQQQHQ PITTTVGFTG NNNISPQFLP HHPLPPQPQQ TPPPLHHNGN  60
GGGSGGPGGP GGLIRPGSMA ERARLANIPL PETALKCPRC DSTNTKFCYF NNYSLTQPRH  120
FCKSCRRYWT RGGALRSVPV GGGCRRNKRT KNTSGGGGGG GGSSSSGNSK SQDSTTSNDQ  180
YHHRNMVNNQ MGPPSSSTSL SSLLSSYNAG LIPGHDHNSN NNNILGLGSS LPPLKLMPPL  240
DFTDNFSLQY GAASAPSYHI GGGSSGGSGG GGASTLLTGF DQWRFPATHH QLPLLGGLDN  300
SSSSGLYPFD HQNQTGMEQQ NPGYGLVTGS GQYRPKNIFH NLVSSSSSAS SAMVTATASQ  360
LASVKMEDSN NQLNMSRQLF GNEQQLWNIH GTAASTAAAT TSSWSDVSNN FSSSSTSNI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00483	DAP	Transfer from AT5G02460	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g40050

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241023	0.0	AC241023.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039N20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009125451.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
Swissprot	Q9LZ56	1e-171	DOF51_ARATH; Dof zinc finger protein DOF5.1
TrEMBL	A0A3P5ZX96	0.0	A0A3P5ZX96_BRACM; Uncharacterized protein
STRING	Bra028872.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11519	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-133	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]