PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g39330
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family E2F/DP
Protein Properties Length: 392aa    MW: 42934.3 Da    PI: 6.5788
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g39330genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.42.1e-27103185271
    E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Tp6g39330 103 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnndgtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 185
                689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.1E-1361392IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.7E-4698191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-35102185IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-25104185IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-21105186IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144587.05E-43190293IPR014889Transcription factor DP, C-terminal
SMARTSM011385.0E-64192340IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.15E-41192320No hitNo description
PfamPF087817.7E-43193318IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MTTTGSNSNH NHHDDGSVKN NNNNPSTRSW GTAVSGQSVS TSGSMGSPSS RSEQTTTVAT  60
SASDSAFIQL NNLDIQGDDA ASQGASGGKK KKRGQRAAGP DKSGRGLRQF SMKVCEKVES  120
KGRTTYNEVA DELVAEFALP NNDGTSPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE  180
IQWRGLPRTS LSDIEELKAE RLSLRSRIEK KTAYSQELEE QYVGLQNLIR RNEHLYSSGN  240
APSGGVALPF ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDNFVL KTMKFCDQPP  300
LNNGHSNSQE TSHKFVPQNN NEGPSTDPAP PQPVDMYQSH PHPQPPQHQL HAQPQIVPTP  360
VTNNGVASAA DTAPVTSTPL SGIIKSRVKP EN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3796190193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g39330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423720.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_010423721.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_010423722.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY20.0DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1J3IU650.0A0A1J3IU65_NOCCA; Transcription factor-like protein DPB
STRINGBostr.2128s0112.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-179Transcription factor DP