PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g38980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 272aa    MW: 29947.6 Da    PI: 6.0571
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g38980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05245268123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                + C+ C+++F++ + L++H +  H
  Tp6g38980 245 FGCQSCNRRFTSEMGLQSHTKAkH 268
                56*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.658245272IPR007087Zinc finger, C2H2
PROSITE patternPS000280247268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEFWGVEVKS GVPLSVDPGE EMLVHISLAA LGEKKDSGNE PVRLYMKIGD QKLLIGTLSH  60
DKFPQLNTEI VLEKRFELSH SWKNGSVFFS GYKVDTSEKY PLLFKHMLLL LNPTTLLMNM  120
IWGPVVLLYP AVAKSGVKQE EKKVTAEVDD SDEDDEDDSS DDDEDDSSDE DTPEKAEESK  180
KRPAEANTSK NPASNKKAKF VTPQKTEMKK PHVHIATPHP SKQGGKNSGS NGETSKQTPK  240
SGGAFGCQSC NRRFTSEMGL QSHTKAKHSA AA
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g38980
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398832.11e-110histone deacetylase HDT3
TrEMBLV4KQT01e-109V4KQT0_EUTSA; Uncharacterized protein
STRINGXP_006398832.11e-110(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.14e-47histone deacetylase 2C