PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g38980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 272aa MW: 29947.6 Da PI: 6.0571 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.8e-05 | 245 | 268 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C+++F++ + L++H + H Tp6g38980 245 FGCQSCNRRFTSEMGLQSHTKAkH 268 56*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.658 | 245 | 272 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 247 | 268 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEFWGVEVKS GVPLSVDPGE EMLVHISLAA LGEKKDSGNE PVRLYMKIGD QKLLIGTLSH 60 DKFPQLNTEI VLEKRFELSH SWKNGSVFFS GYKVDTSEKY PLLFKHMLLL LNPTTLLMNM 120 IWGPVVLLYP AVAKSGVKQE EKKVTAEVDD SDEDDEDDSS DDDEDDSSDE DTPEKAEESK 180 KRPAEANTSK NPASNKKAKF VTPQKTEMKK PHVHIATPHP SKQGGKNSGS NGETSKQTPK 240 SGGAFGCQSC NRRFTSEMGL QSHTKAKHSA AA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g38980 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398832.1 | 1e-110 | histone deacetylase HDT3 | ||||
TrEMBL | V4KQT0 | 1e-109 | V4KQT0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398832.1 | 1e-110 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2027 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 4e-47 | histone deacetylase 2C |