PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g38930

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HD-ZIP

Protein Properties

Length: 220aa MW: 25609.8 Da PI: 8.4372

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g38930	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	80	134	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++t+eql Le++F+++ +++a+++ +L+k+l+L+ rqV vWFqNrRa++k Tp6g38930 80 KKKKKLTNEQLASLEQCFQEDIKLDADRKLKLSKELRLQPRQVAVWFQNRRARWK 134 67889*************************************************9 PP
2	HD-ZIP_I/II	112.8	2.2e-36	80	168	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk++l++eq+++LE++F+e+ kL+ +rK +l++eL+lqprqvavWFqnrRAR+k k+lE+ y++L+++yd +++en++L++ev++Lr Tp6g38930 80 KKKKKLTNEQLASLEQCFQEDIKLDADRKLKLSKELRLQPRQVAVWFQNRRARWKVKHLEESYDSLRQEYDVVSRENQMLNNEVRKLRG 168 59*************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.37E-18	68	135	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.763	76	136	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.5E-19	76	141	IPR009057	Homeodomain-like
SMART	SM00389	2.0E-17	78	140	IPR001356	Homeobox domain
CDD	cd00086	4.50E-15	80	137	No hit	No description
Pfam	PF00046	1.1E-16	80	134	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	111	134	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MEMEWSTTSN AENMRVAYVP VPWLESNSSN SLHNFSYDPY AGNSSTPALT QTEPVISLPE 60 SEKITNAYQC PSNNNGEMIK KKKKLTNEQL ASLEQCFQED IKLDADRKLK LSKELRLQPR 120 QVAVWFQNRR ARWKVKHLEE SYDSLRQEYD VVSRENQMLN NEVRKLRGII LKDHLMKRQS 180 NLNNNQMAGG SQTFATDQYN NPMFVASTCW PPISQQPYQW

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g38930

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013666190.1	1e-129	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	6e-96	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A0D3EI29	1e-125	A0A0D3EI29_BRAOL; Uncharacterized protein
STRING	Bo9g181710.1	1e-126	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-98	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]