PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g38600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28294.1 Da PI: 9.7845 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.1 | 7.6e-14 | 74 | 123 | 1 | 52 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIk 52 ++ +hn+ Er RR+++N ++ Lr llP+ + +++Kls +++ +v+YI Tp6g38600 74 KKLNHNASERDRRRKLNALYSSLRALLPPsD---QKRKLSIPMTVSGVVKYIP 123 6789*************************66...9999**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.916 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.30E-11 | 74 | 130 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-13 | 74 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-11 | 74 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-10 | 74 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-9 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEYPWLQSQV DPFSPALHLP SFLYPSFFAP SDDYKNYNIV PHHYHMNLTH SNGSNSNSNS 60 NKDQEVDGGS VLVKKLNHNA SERDRRRKLN ALYSSLRALL PPSDQKRKLS IPMTVSGVVK 120 YIPEQKQELQ RLSTRKEELL KRISRKTANQ EQLRERAMME SIDSSSQTIA ANWITDTEMA 180 VQIATSSRTS ISDMLLRLEQ NGLNVISVSS SVSSAARIFY TLHLKMRGDC RVRLEDLDGM 240 LFGLRQSY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g38600 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013740065.1 | 1e-123 | transcription factor bHLH101 | ||||
Swissprot | Q9FYE6 | 1e-106 | BH101_ARATH; Transcription factor bHLH101 | ||||
TrEMBL | A0A397ZRW4 | 1e-121 | A0A397ZRW4_BRACM; Uncharacterized protein | ||||
STRING | XP_006398871.1 | 1e-121 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04150.1 | 1e-106 | bHLH family protein |