PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g38390
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 247aa    MW: 26243.2 Da    PI: 9.0619
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g38390genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001492114123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ C+k Fs+   L  H  +H
  Tp6g38390  92 YKCSVCDKAFSSYQALGGHKASH 114
                9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-991114No hitNo description
PfamPF139122.0E-1392116IPR007087Zinc finger, C2H2
SMARTSM003550.007392114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.65892119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-492114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-9145172No hitNo description
Gene3DG3DSA:3.30.160.602.1E-4148173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-12150174IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325150177IPR007087Zinc finger, C2H2
SMARTSM003550.073150172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055062Biological Processphosphate ion homeostasis
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0001047Molecular Functioncore promoter binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MALEALTPPR LASPIPTLFQ DSAVGFHGSK GKRSKRSRSD LDRHNSSLTD DEYIALCLML  60
LARDGDRNRD RDMPFSSSSP PLLSTLTPTP IYKCSVCDKA FSSYQALGGH KASHRKNSTP  120
TLSSGGDEQP TSSAITTVSH GSGGGTVKSH VCSICNKSFA TGQALGGHKR CHYEGKNGGG  180
GGGSSSVSNS KGMGSISHVS SSSHHHHHHH QRGFDLNIPP IPEFSTVNGD EEVMSPMPAK  240
KLRLDLQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00622PBMTransfer from AT5G04340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g38390
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment and during Pi starvation. {ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:17631527}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530411e-174AK353041.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-E15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398890.11e-113zinc finger protein ZAT6
SwissprotO225331e-102ZAT6_ARATH; Zinc finger protein ZAT6
TrEMBLA7J1461e-112A7J146_BRACI; C2H2 zinc finger protein
TrEMBLE4MWZ41e-112E4MWZ4_EUTHA; mRNA, clone: RTFL01-13-E15
TrEMBLV4LKJ61e-112V4LKJ6_EUTSA; Uncharacterized protein
STRINGXP_006398890.11e-113(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.12e-80zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Shi H, et al.
    The Cysteine2/Histidine2-Type Transcription Factor ZINC FINGER OF ARABIDOPSIS THALIANA6 Modulates Biotic and Abiotic Stress Responses by Activating Salicylic Acid-Related Genes and C-REPEAT-BINDING FACTOR Genes in Arabidopsis.
    Plant Physiol., 2014. 165(3): p. 1367-1379
    [PMID:24834923]
  3. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Li Y, et al.
    The C2H2 zinc-finger protein SlZF3 regulates AsA synthesis and salt tolerance by interacting with CSN5B.
    Plant Biotechnol. J., 2018. 16(6): p. 1201-1213
    [PMID:29193661]
  6. Kim SY,Hyoung S,So WM,Shin JS
    The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
    Plant Mol. Biol., 2018. 96(3): p. 315-326
    [PMID:29335898]
  7. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]
  8. Shi H,Liu G,Wei Y,Chan Z
    The zinc-finger transcription factor ZAT6 is essential for hydrogen peroxide induction of anthocyanin synthesis in Arabidopsis.
    Plant Mol. Biol., 2018. 97(1-2): p. 165-176
    [PMID:29675814]