PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g38340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 370aa MW: 40794.4 Da PI: 7.8625 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00043 | 159 | 181 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Tp6g38340 159 YQCKTCDRTFPSFQALGGHRASH 181 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 237 | 259 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Tp6g38340 237 HECGICGAEFTSGQALGGHMRRH 259 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.18E-8 | 158 | 181 | No hit | No description |
Pfam | PF13912 | 2.1E-12 | 158 | 183 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.471 | 159 | 186 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 159 | 181 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 161 | 181 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.18E-8 | 232 | 259 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.5E-4 | 235 | 261 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.3E-11 | 236 | 261 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.047 | 237 | 259 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 237 | 261 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 239 | 259 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MEAFEEAIAA SKEQSLILKG KRTKRQRPQS PIPFSIAPPI VSSPRDIEEE STDLDSKENA 60 LGNNVENRKK DGVITSSSSS ASWSSNNNPT LKTQEDEEDQ DIANCLILLA QGHSLPHQNQ 120 QLKIPHHETN NNNTYRFSSR RFLETSSSNG GGKAGYYVYQ CKTCDRTFPS FQALGGHRAS 180 HKKPKATSFY SNLDIKKNIY ENDAVSLVTT TTIYNNTKNN NNRSLVLYGK AGNNKVHECG 240 ICGAEFTSGQ ALGGHMRRHR GAVVVAAAPA PTVTVATTVA NTELSLSSMS FDQISDGQDH 300 LMMPATKRAK KTVVSLDLDL NLPAPEDENR VNGFSFALKQ THEQEHQQTK QREEPKCLLM 360 SAPTLVDCHY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g38340 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398898.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | V4N4N1 | 0.0 | V4N4N1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398898.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2231 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 0.0 | C2H2 family protein |