PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g38340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 370aa    MW: 40794.4 Da    PI: 7.8625
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g38340genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043159181123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+++F++   L  H  +H
  Tp6g38340 159 YQCKTCDRTFPSFQALGGHRASH 181
                9***********99999998887 PP

2zf-C2H213.10.00029237259123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  F++   L  H+r+H
  Tp6g38340 237 HECGICGAEFTSGQALGGHMRRH 259
                78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-8158181No hitNo description
PfamPF139122.1E-12158183IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471159186IPR007087Zinc finger, C2H2
SMARTSM003550.028159181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-8232259No hitNo description
Gene3DG3DSA:3.30.160.607.5E-4235261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11236261IPR007087Zinc finger, C2H2
SMARTSM003550.047237259IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93237261IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEAFEEAIAA SKEQSLILKG KRTKRQRPQS PIPFSIAPPI VSSPRDIEEE STDLDSKENA  60
LGNNVENRKK DGVITSSSSS ASWSSNNNPT LKTQEDEEDQ DIANCLILLA QGHSLPHQNQ  120
QLKIPHHETN NNNTYRFSSR RFLETSSSNG GGKAGYYVYQ CKTCDRTFPS FQALGGHRAS  180
HKKPKATSFY SNLDIKKNIY ENDAVSLVTT TTIYNNTKNN NNRSLVLYGK AGNNKVHECG  240
ICGAEFTSGQ ALGGHMRRHR GAVVVAAAPA PTVTVATTVA NTELSLSSMS FDQISDGQDH  300
LMMPATKRAK KTVVSLDLDL NLPAPEDENR VNGFSFALKQ THEQEHQQTK QREEPKCLLM  360
SAPTLVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g38340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398898.10.0zinc finger protein ZAT5
TrEMBLV4N4N10.0V4N4N1_EUTSA; Uncharacterized protein
STRINGXP_006398898.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.10.0C2H2 family protein