PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g38060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 218aa MW: 24518.3 Da PI: 6.8713 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 1e-13 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E++l++ + k++G+g+W++I+r + Rt+ q+ s+ qky Tp6g38060 97 PWTELEHKLFLVGLKKYGKGDWRSISRNVVVSRTPTQVASHAQKY 141 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.356 | 1 | 54 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-4 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.32E-11 | 4 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.00E-5 | 6 | 51 | No hit | No description |
PROSITE profile | PS51294 | 17.025 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-15 | 92 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-16 | 93 | 145 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.5E-11 | 94 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-10 | 96 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-9 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 1.7E-11 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MASSQWTRAE DKMFEQALVL FPEEFPSRWE KIADQLHKSV AEVMDHYEAL VHDVLEIDSG 60 RVVVPDYVDD SAAGWDSAGQ ISFGSKHGEG ERKRGTPWTE LEHKLFLVGL KKYGKGDWRS 120 ISRNVVVSRT PTQVASHAQK YFLRQNSGKK ERKRSSIHDI TTVDPTLAMP GSTMDWSGQH 180 NSPSVQSQQH DSPPVQAQQP QHKASEFGQQ LAPGYFGM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g38060 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873168.1 | 1e-124 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-56 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | D7LXM5 | 1e-122 | D7LXM5_ARALL; Uncharacterized protein | ||||
STRING | scaffold_600421.1 | 1e-123 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-115 | MYB family protein |
Publications ? help Back to Top | |||
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