PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g36150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 338aa MW: 37679.1 Da PI: 9.4106 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.2e-18 | 189 | 243 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Tp6g36150 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 243 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.1 | 1.8e-41 | 189 | 279 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LE+sF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +lk Tp6g36150 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELR-ALK 279 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.85E-18 | 181 | 246 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.908 | 185 | 245 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-16 | 187 | 249 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.28E-15 | 189 | 246 | No hit | No description |
Pfam | PF00046 | 2.6E-15 | 189 | 243 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-17 | 189 | 243 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 220 | 243 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.00853 | 238 | 277 | No hit | No description |
Pfam | PF02183 | 2.8E-11 | 245 | 279 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.3E-26 | 245 | 288 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MELALCLGEN TNKFSFLEKP SKISNNPSAS STSTSDKDLG FNIGLDVLGF GGHRSLSSSS 60 SPSVEDEKKK KNKRKLAPRA NDSDGFRVSS SLDPSLQLQL HFPWLPENSR QGGRMLSGAA 120 TVPEEEEEAA PSMSVSPPDS VTSSFRLNFG IKSYGYERRS NKRDIDDEVE RSASRASNED 180 NDDENGTTRK KLRLSKDQSA FLEDSFKEHS TLNPKQKVAL AKQLNLRPRQ VEVWFQNRRA 240 RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRALKT SSPFYMQLPA TTLTMCPSCE 300 RVASQPSTSS AHNIGLSNKS SFQSHLLPVK PGPAKQVS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 75 | EKKKKNKRKL |
2 | 68 | 75 | KKKNKRKL |
3 | 187 | 193 | TRKKLRL |
4 | 237 | 245 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g36150 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442295.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT14 | ||||
Swissprot | P46665 | 0.0 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A0D3EH95 | 0.0 | A0A0D3EH95_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g175900.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4928 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-149 | homeobox from Arabidopsis thaliana |