PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g36080
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 242aa    MW: 25541.6 Da    PI: 10.0974
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g36080genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-073760225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k ++C  f+ t  C++Gd+C+F+H
  Tp6g36080 37 KSKPCTKFFSTSGCPFGDNCHFMH 60
               7789******************** PP
2zf-CCCH29.71.1e-09208233127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+lC  +a+ G C yG +C+FaHg+
  Tp6g36080 208 YKTKLCGKYAE-GNCTYGHSCHFAHGE 233
                9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0983562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9533563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-63662IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-53760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-83760IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.55E-14103180IPR004088K Homology domain, type 1
SMARTSM003227.2E-9111181IPR004087K Homology domain
PROSITE profilePS5008414.173112176IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.3E-15112180IPR004088K Homology domain, type 1
CDDcd001052.61E-12114177No hitNo description
PfamPF000134.8E-11114176IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.0E-15202237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8206237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915207234IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6207233IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-7208233IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDTRKRGRPE AGSYNSNGGF KRSKQEMESN STGLGSKSKP CTKFFSTSGC PFGDNCHFMH  60
YVPGGYNAVA EMTNRGPTIA QVSRNMQNPG GAGRFSGRGG PRAGPVSSFG ASATAKISVD  120
ASLAGAIIGK GGIHSKEICR QTGAKLSIQD HERDPNLKNI ELGGTFEQIN EASEMVKVLI  180
GRVGSAASAR RPQGFGGSEG KPYPRGNYKT KLCGKYAEGN CTYGHSCHFA HGEAELRRSG  240
IA
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g36080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873278.11e-134zinc finger CCCH domain-containing protein 52 isoform X1
SwissprotQ9FG301e-133C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLA0A087G5B31e-140A0A087G5B3_ARAAL; Uncharacterized protein
STRINGA0A087G5B31e-141(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-124C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]