PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g35290

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ERF

Protein Properties

Length: 213aa MW: 23838.3 Da PI: 4.9343

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g35290	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52	1.7e-16	111	161	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f + +Aa+a++ a+ kl+g Tp6g35290 111 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDVDAARAYDCAAFKLRG 161 7******.******954..34******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	7.3E-31	110	170	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-22	111	170	IPR016177	DNA-binding domain
SMART	SM00380	8.3E-36	111	175	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.487	111	169	IPR001471	AP2/ERF domain
Pfam	PF00847	2.9E-11	111	161	IPR001471	AP2/ERF domain
CDD	cd00018	1.16E-29	111	169	No hit	No description
PRINTS	PR00367	4.0E-13	112	123	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-13	151	171	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0009414	Biological Process	response to water deprivation
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:1902074	Biological Process	response to salt
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MATFEESSDL QKHLFEDFMV SDGFMGDFDF DASFVSGLLC IEPVMNQVPK QEPDSPVLDA 60 DSFVKAFLQV EAESSTSTGI SELNSSSHET DQSVSTRKKP KRFEEEEEPR HYRGVRRRPW 120 GKFAAEIRDP AKKGSRIWLG TFESDVDAAR AYDCAAFKLR GRKAVLNFPL DAGKYEAPTN 180 SGRKRKRSGV QEELQRSQSN SSSSSSDGET ICE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-28	110	170	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g35290

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY350711	0.0	AY350711.1 Sisymbrium irio clone BAC Sio11E11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009122325.2	1e-122	PREDICTED: ethylene-responsive transcription factor ERF106
Refseq	XP_013715722.1	1e-122	ethylene-responsive transcription factor ERF106
Swissprot	Q9LY05	1e-104	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	Q6V5I2	1e-126	Q6V5I2_SISIR; AP2 transcription factor
STRING	Bra009250.1-P	1e-122	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3229	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	9e-97	ERF family protein

Publications ? help Back to Top
Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]