PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g33980

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 393aa MW: 44145.5 Da PI: 4.914

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g33980	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.7	4.1e-48	6	134	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l+pGfrFhPtd elv +yLk+kv +kkl + ++i+e+diyk+eP+dLp k +k+++ +w+fF++r+kkyatg r+nrat+ gyWk+tgk+++vl+ ++e Tp6g33980 6 LAPGFRFHPTDVELVRYYLKRKVMRKKLLV-DAIAELDIYKFEPHDLPdKsYIKSGDLKWHFFCPREKKYATGVRANRATECGYWKTTGKERPVLC-NEE 103 579**********************999.89**********96347778888**********************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 +vg ktLv++ g++p+ge+tdWvmheyrle Tp6g33980 104 VVGKIKTLVYHFGKSPRGERTDWVMHEYRLE 134 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-56	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	52.005	6	156	IPR003441	NAC domain
Pfam	PF02365	8.6E-26	8	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MGKTQLAPGF RFHPTDVELV RYYLKRKVMR KKLLVDAIAE LDIYKFEPHD LPDKSYIKSG 60 DLKWHFFCPR EKKYATGVRA NRATECGYWK TTGKERPVLC NEEVVGKIKT LVYHFGKSPR 120 GERTDWVMHE YRLEDKVLTQ KNVPQDTYVL CVLFKKDGPG PRNGAQYGAP FKEEDWSDEE 180 QHTVVSATNN PAILHVPNEE ASVVVAPSHD PKKDCFGGMI SESCVSDFLP ATATTSELPH 240 LNDAANTPMS AAPLLDSNST ASLPQTLQAP NNDDDIYSML DLFVDEDEYL RFCEPKNNEV 300 RHNPNVSTPI CLGEGVFSEL PDFSNMHNNS MPWPPSYDLI ENSELYLELQ DLTAPLAPPQ 360 IGNVSNSYLS HQGHFDFSTA ASDDPYGFSA SMG

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MGKTQLAPGF RFHPTDVELV RYYLKRKVMR KKLLVDAIAE LDIYKFEPHD LPDKSYIKSG  60
DLKWHFFCPR EKKYATGVRA NRATECGYWK TTGKERPVLC NEEVVGKIKT LVYHFGKSPR  120
GERTDWVMHE YRLEDKVLTQ KNVPQDTYVL CVLFKKDGPG PRNGAQYGAP FKEEDWSDEE  180
QHTVVSATNN PAILHVPNEE ASVVVAPSHD PKKDCFGGMI SESCVSDFLP ATATTSELPH  240
LNDAANTPMS AAPLLDSNST ASLPQTLQAP NNDDDIYSML DLFVDEDEYL RFCEPKNNEV  300
RHNPNVSTPI CLGEGVFSEL PDFSNMHNNS MPWPPSYDLI ENSELYLELQ DLTAPLAPPQ  360
IGNVSNSYLS HQGHFDFSTA ASDDPYGFSA SMG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-42	6	156	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g33980

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470726.1	0.0	PREDICTED: NAC domain-containing protein 82-like
Swissprot	Q9FY82	0.0	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A3N6UI98	0.0	A0A3N6UI98_BRACR; Uncharacterized protein
STRING	XP_006399407.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3692	25	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	0.0	NAC domain containing protein 82

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]