PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g33920
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CAMTA
Protein Properties Length: 1008aa    MW: 113812 Da    PI: 6.1923
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g33920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1187.81.1e-5851222118
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                l+e ++rwl++ ei++iL+n++k+++t+e++trp sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+++vl+cyYah+e n++fqrrcyw
  Tp6g33920   5 LSEaQHRWLRPAEICEILQNYQKFHITSESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSIDVLHCYYAHGEGNENFQRRCYW 104
                45559*********************************************************************************************** PP

       CG-1 101 lLeeelekivlvhylevk 118
                +Le++l +iv+vhylevk
  Tp6g33920 105 MLEQDLMHIVFVHYLEVK 122
                ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143785.9851127IPR005559CG-1 DNA-binding domain
SMARTSM010769.7E-874122IPR005559CG-1 DNA-binding domain
PfamPF038591.8E-517121IPR005559CG-1 DNA-binding domain
PfamPF018332.4E-4416496IPR002909IPT domain
SuperFamilySSF812961.92E-14416502IPR014756Immunoglobulin E-set
PfamPF127965.5E-7597675IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.863598709IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-17599710IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.82E-19599709IPR020683Ankyrin repeat-containing domain
CDDcd002041.85E-14610700No hitNo description
PROSITE profilePS500888.683615647IPR002110Ankyrin repeat
SMARTSM002482800615644IPR002110Ankyrin repeat
PROSITE profilePS5008811.327648680IPR002110Ankyrin repeat
SMARTSM002480.0018648677IPR002110Ankyrin repeat
SuperFamilySSF525403.72E-8822873IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.34823845IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.638825853IPR000048IQ motif, EF-hand binding site
PfamPF006127.5E-4825844IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0054846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.322847871IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4849868IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1008 aa     Download sequence    Send to blast
MEQLLSEAQH RWLRPAEICE ILQNYQKFHI TSESPTRPAS GSLFLFDRKV LRYFRKDGHN  60
WRKKKDGKTI KEAHEKLKVG SIDVLHCYYA HGEGNENFQR RCYWMLEQDL MHIVFVHYLE  120
VKGNRTSIGV KENNSNSVNG TASVNIDSTA SPTSMLSSLC EDADSGDSHQ ASSVFRASPE  180
PQTGNRSGWT SAPGIRIDSH VHGNRDRESD SQRLFDVQAW DGVDNLVTRY DQPCNNLLTQ  240
LQSSNSESML VEERTEKGGL LTAEHLRNPL QTHLNWQIPG QDDLPSPKWP VDLVSHSKMT  300
DDTDLALFEP SAQDHFETFS SLRGSENQLP IGNSFQAPPL SMESEYRPVK KSLLKHEDSL  360
KKVDSFSRWA SKELGEMEDL QLQSSRGDFA WTTVDCETAA DGPSLSPSLS EDQRFTIVDF  420
WPKCAATDAE VKVMVIGTFL LSPQEVTKYN WSCMFGEVEV PAEILVDGVL CCHAPPHTAG  480
QVPFYVTCSN RFACSELREF DFLSETSKKM DVADIYGIYT NESSLQLRIE RLLAQRASIH  540
EHQIFEDVGE KRRKISKIML LKEEKEYLVG MYEKNSTKQE PKERRFREQF EDELYIWLIH  600
KVTEEGKGPN ILDEDGQGIL HFVAALGYDW AIKPILTAGV NINFRDANGW SALHWAAFSG  660
REETVAVLVS LGADARALTD PSPELPLGKT AADLAYVNGH RGISGFLAES SLTSYLEKLT  720
IESKENSSAN SSGPKAVQTV SERTAAPMGY GDVLETLSLK DSLTAVRNAT QAADRLHQVF  780
RMQSFQRKQL SGFGDDDEIG ISNELAVSFA ASKTKNPGHS DVSVHSAAIH IQKKYRGWKK  840
RKEFLIIRQR VVKIQAHVRG HQVRKQYKPI VWSVGLLEKI ILRWRRKGTG LRGFKRNAIP  900
KTVEPEQPVS SLCPTIPQED DYDFLEKGRK QTEERLQKAL TRVKSMVQYP EARDQYRRLL  960
TVVEGFRENE ASSSSSINNR EELVNCEGDD LIDIDSLLND DTLMSISP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g33920
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4913040.0AF491304.1 Brassica napus calmodulin-binding transcription activator (CAMTA) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399418.10.0calmodulin-binding transcription activator 1 isoform X1
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLV4N5T00.0V4N5T0_EUTSA; Uncharacterized protein
STRINGXP_006399418.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein