PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g31310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | SRS | ||||||||
Protein Properties | Length: 405aa MW: 42048.9 Da PI: 8.2271 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 211 | 3e-65 | 199 | 359 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + + + ++ ++++ +k++r ++q+++s+t++s++ ++++++t Tp6g31310 199 SGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMSTGNPTAGSSLSTSSGTKKPRIV-GSQQQTTSHTSTSNT-PPQSFDT 296 7899**********************************************99999988888888899999999987.566666777776666.6778888 PP DUF702 103 ss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ss +P +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle Tp6g31310 297 SSsrqdgggsreaWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEP 359 88899*******************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.2E-59 | 201 | 358 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.5E-26 | 203 | 245 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.3E-30 | 309 | 357 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MDVKDLTGAA AVATTRRHNL PTSDSGAFTD WAATTTTTSS RATEDLSLGF NASPAVAHGD 60 LGSASAAAGV SSWPPGSSVR YGLPSSAAAT EMGMVGLRDV YLVAPAYHHQ NAGIVSGSDQ 120 INSNAAAAAL GVGVIPLLTT APSQQQNVEE TDINFFGNSR RWHNNNSNNN QTQYLHFKST 180 HQTTVASSSN NSGSGSAASG TATCQDCGNQ AKKECKQRRC RTCCKSRGFD CSTHVKSTWV 240 SAARRRERQV MSTGNPTAGS SLSTSSGTKK PRIVGSQQQT TSHTSTSNTP PQSFDTSSSR 300 QDGGGSREAW PGQVRAAAVF KCVRVTAVED GDDEYAYQAV VKIGGHVFKG FLYDQGLEPK 360 EGFPNMSDLH LGGGANNHNG VSASPPILDA PNVYGGGGSG GGFFG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g31310 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU205266 | 0.0 | GU205266.1 Brassica rapa subsp. pekinensis lateral root primordium 1 (LRP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190295.1 | 0.0 | Lateral root primordium (LRP) protein-like protein | ||||
Refseq | XP_013727118.1 | 0.0 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 1e-163 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A397XVM5 | 0.0 | A0A397XVM5_BRACM; Uncharacterized protein | ||||
STRING | AT5G12330.4 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5883 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 1e-166 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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