PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g29870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 265aa MW: 30272.5 Da PI: 9.5633 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.8e-05 | 98 | 120 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H Tp6g29870 98 SCSVCSRVYPTSRLLSIHISEaH 120 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.11 | 70 | 95 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 72 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5 | 97 | 120 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 99 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.4 | 135 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 137 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MAMGMAVDTV GELVFPYWTP LRRKFPPDSP FFASGNVERE LLAKQVALDL TEDEINNLQK 60 IVETESSRRI SCPIVGCPER LKSLENFEDH YKARHTASCS VCSRVYPTSR LLSIHISEAH 120 DSFFQAKVAR GYDMYECLVE GCGLKFKKYK ARHRHLVDKH KFPTTFEFFK KTQLSKKRRE 180 KLQRQRVSKL KHEEDKEEAL SDAMEVEDKV NLDGLVSALS TLTTSDTTPS NVSFGRRHGR 240 GLNFVPRSVR REERTKSSSA PGPTT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 180 | KKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g29870 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493748 | 0.0 | AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010453529.1 | 1e-179 | PREDICTED: zinc finger protein 511 isoform X1 | ||||
TrEMBL | A0A178UDE4 | 1e-174 | A0A178UDE4_ARATH; Uncharacterized protein | ||||
TrEMBL | Q0WRF4 | 1e-174 | Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein | ||||
TrEMBL | Q84WK1 | 1e-174 | Q84WK1_ARATH; At5g14140 | ||||
STRING | XP_010453529.1 | 1e-178 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9971 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-154 | zinc ion binding;nucleic acid binding;zinc ion binding |