PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g29520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 446aa MW: 50215 Da PI: 7.6168 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.7 | 1.8e-30 | 128 | 266 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgy......Wkatgk 88 lp+G++F+Ptdee++ e+L++k+ + l + ++i +v di++++P++Lp v+++ ++ +fF k ++y++g+rk+r +t sg W++tgk Tp6g29520 128 LPKGVKFEPTDEEVI-EHLEAKCGIDGskpnLLIPDFICSVnDINYTHPQNLP-GVNKDGTSAFFFNKMVHAYSNGERKRRrITPSGLkdalvrWRKTGK 225 799************.99****76555335533445677777***********.67788899*****************997777665555566****** PP NAM 89 dkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +k+v+ +g ++g+kk +v+yk + k+ek++Wv+h+y+l Tp6g29520 226 TKPVIL-NGVQKGCKKFMVLYKSatKGLKPEKCNWVLHQYHL 266 ******.999***********6422666778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-34 | 115 | 284 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.913 | 128 | 284 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-12 | 129 | 266 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MDQYTCNRLE IVSVDILGLL SLDLPKNHLS TNFQQARLPK LFTAPKLQKT VQSSGSLSEP 60 NACQAKSSTI QYPSLRNWIV DGPWIARNVK NASVSSALQM KDCGAYINCP NCCYRIDNRN 120 VLTPWPGLPK GVKFEPTDEE VIEHLEAKCG IDGSKPNLLI PDFICSVNDI NYTHPQNLPG 180 VNKDGTSAFF FNKMVHAYSN GERKRRRITP SGLKDALVRW RKTGKTKPVI LNGVQKGCKK 240 FMVLYKSATK GLKPEKCNWV LHQYHLGLEE EEIGEYVVSK IMYQQQAQWK KTAGESESFG 300 VRDDPKEPKT TTPTPLRPVV SIAEDEIAYD DTEMVLDPFV QGLENTPEAS FGSTWDDVAQ 360 VAGDLNVTED ITLSKKVECS SSVVEKNPNY WDFNIGSENY FVSNLKNDDL GTLPDVRSRQ 420 NKDYKMALFS DKRREDPEKK AKSKDM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 206 | RKRRR |
2 | 203 | 207 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g29520 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL163792 | 5e-52 | AL163792.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project). | |||
GenBank | AL163817 | 5e-52 | AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project). | |||
GenBank | CP002688 | 5e-52 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020878607.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X3 | ||||
Swissprot | Q6NQK2 | 5e-68 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | D7M6K1 | 1e-179 | D7M6K1_ARALL; Predicted protein | ||||
STRING | Bostr.2902s0186.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 1e-170 | NAC domain containing protein 85 |