PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g28940
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 552aa    MW: 59334.6 Da    PI: 7.4504
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g28940genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-30228287159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+
  Tp6g28940 228 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 287
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31213289IPR003657WRKY domain
SuperFamilySSF1182902.09E-27221289IPR003657WRKY domain
PROSITE profilePS5081128.69223289IPR003657WRKY domain
SMARTSM007741.5E-36228288IPR003657WRKY domain
PfamPF031066.7E-27229287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MEVLLKLPTS DSLLKDKVLG SVQIHEASKV DDGDNQELES AKAEMSEVKE ENQKLKGMLE  60
RIESDYKSLR LRFFDIIQQE PSNNQTRDQN MVDLPKATTN LSCLDQEREL VSLSLGRRSS  120
SPSDNTSKKE EKADAMSKEV NADEELTKAG LTLGFNNGNG SEPNASVNPA NASLENSSGE  180
TSQPSKVTGK RSSPAPASGG DVDGEAGQQN HVKRARVCVR ARCDTPTMND GCQWRKYGQK  240
IAKGNPCPRA YYRCTVAPGC PVRKQVQRCA EDMSILITTY EGTHSHPLPL SATTMASTTS  300
AAASMLLSGS SSSSSSAAVM IGNNLYDNSR FNNNNKSFYS PTLHSPLHPT VTLDLTAPQH  360
SSSSLPSFNF NKFSNSFQRF PSTSLNFSFN SSSSSSTTSS TLNLPAIWGN GYPSYTPYPY  420
NSVQFGTSNL GKTVQNNQSL TETLTKALTS DPSFHSVIAA AISSMVGSNG EQQVVGPRHP  480
ITNNVQQTAA ANNNKGCGGY FSSLLMSNVI ANNQTGASLD QPPSSQPPPL SMFKNSSSSS  540
STTCFVNKEE KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22215289174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g28940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300780.0KF430078.1 Brassica rapa WRKY transcription factor 72 (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400030.10.0probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLV4LNU90.0V4LNU9_EUTSA; Uncharacterized protein
STRINGXP_006400030.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72