PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g28920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 308aa MW: 35693.6 Da PI: 6.9118 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.9e-18 | 117 | 169 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Tp6g28920 117 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 169 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.4 | 3e-41 | 115 | 206 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+ eqv++LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++el Tp6g28920 115 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELV 206 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.91E-19 | 105 | 173 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-17 | 114 | 175 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.552 | 115 | 171 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.24E-15 | 116 | 172 | No hit | No description |
Pfam | PF00046 | 3.2E-15 | 117 | 169 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 119 | 179 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 142 | 151 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 146 | 169 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 151 | 167 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.4E-15 | 171 | 210 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MYMYEEERNN IVNNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS CPPHLFYGGG 60 GGGNYMMNRS MSFTGVSDHH HLTQKSPTTT NMNDQDQLGE EDNLSDDGSH MMLGEKKKRL 120 NLEQVRALEK SFELGNKLEP ERKMQLAKAL GLQPRQIAIW FQNRRARWKT KQLERDYDSL 180 KKQFDVLKSD NDSLLAHNKK LHAELVALKK QDRKESTKIK REASWSNNES TENNNTNSDI 240 NHVNMIKDLF PSSIRSTTTT TTSAHIDHQM VQDQGFCNMF NGIDETTSAS YWTWPDQQQQ 300 HHNHHQFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 171 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g28920 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229364 | 0.0 | AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06. | |||
GenBank | BT044059 | 0.0 | BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013680513.1 | 0.0 | homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q00466 | 0.0 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A397XU22 | 0.0 | A0A397XU22_BRACM; Uncharacterized protein | ||||
STRING | XP_006400032.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 1e-161 | homeobox 3 |