PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g28860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 259aa MW: 28424 Da PI: 8.7012 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.6 | 5.4e-32 | 53 | 110 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa++Ggha+DGCgEf+ps + + +++++l+CaACgCHRnFHRre ++ Tp6g28860 53 VATYKECLKNHAARIGGHALDGCGEFIPSASFNsNDPTSLTCAACGCHRNFHRREDDQ 110 579**************************9999889******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-25 | 52 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.6E-31 | 55 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.1E-27 | 55 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.663 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.82E-17 | 167 | 230 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 171 | 229 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.7E-24 | 173 | 229 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDVIATTATI VSDLDTRQPE IEAPTRIHPA KPISFSNAKR CRHHHDHLAF EAVATYKECL 60 KNHAARIGGH ALDGCGEFIP SASFNSNDPT SLTCAACGCH RNFHRREDDQ SSVSALIPAI 120 EFRPHNRHQL PQPPPTVGIR SPDDDYSASP PPISSSYMLL ALSGGATAVP LSRKRFRTKF 180 SQFQKEKMFE FAERVGWRMP KADDVSVIEF CREIGVEKSV FKVWMHNNKI PGRGGAKRAN 240 GGGGDGRESV PTNGSFSST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-21 | 172 | 232 | 16 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g28860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353323 | 0.0 | AK353323.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-M06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400038.1 | 1e-145 | zinc-finger homeodomain protein 8 | ||||
Swissprot | Q9LXG0 | 1e-141 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | E4MXS6 | 1e-144 | E4MXS6_EUTHA; mRNA, clone: RTFL01-24-M06 | ||||
TrEMBL | V4N7A5 | 1e-144 | V4N7A5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400038.1 | 1e-145 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 1e-130 | homeobox protein 30 |
Publications ? help Back to Top | |||
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