PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g28620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 386aa    MW: 44474 Da    PI: 7.826
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g28620genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000177194123
               EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
               ++C+ Cgk F+    L +H+   H
  Tp6g28620 71 FRCGECGKGFRYEKCLSNHQAGmH 94
               89*****************98666 PP

2zf-C2H210.70.0017284306123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C  C+k Fs++  L  H+  H
  Tp6g28620 284 HQCRLCNKIFSSSQALGGHQTFH 306
                79**************9999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-47190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8437199IPR007087Zinc finger, C2H2
SMARTSM003550.0377194IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807394IPR007087Zinc finger, C2H2
PfamPF139121.5E-4284307IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034284311IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-7284358No hitNo description
SMARTSM003550.43284306IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280286306IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034336363IPR007087Zinc finger, C2H2
PfamPF139122.8E-7336358IPR007087Zinc finger, C2H2
SMARTSM003551.7336358IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEEEHQNLDE PIFGVRRNLK NAQSREEEEE ESIHHQQRDL SCYYGLRENP KKKTQNSFEL  60
ESREPRKKIL FRCGECGKGF RYEKCLSNHQ AGMHSSTSQR VYEESIKSLC SSFCLVRKKK  120
RSRVIRYKKT PLSYSFTTVL ESPSFSVEND EDLEVAECLI LLSKSSPKFV LEAVKLVDEA  180
MDANPETPSG FKSYRKLRKA AEFEYGFLSN EQKLLKEEET SSDEPSTEPA SSLGHKCELD  240
QWKLPKPCHF ESGFYRTELG VRAMERPDSD TDIVTESGKR DVEHQCRLCN KIFSSSQALG  300
GHQTFHRISR SKKKKSYRDE SVETGDESME KEKKKHKCST CSRSFRSVHA LGGHKKCHGK  360
RQQSKAEHDE DMELLSVVPL TVGIEF
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g28620
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400068.11e-171zinc finger protein 485
TrEMBLV4N7C81e-170V4N7C8_EUTSA; Uncharacterized protein
STRINGXP_006400068.11e-171(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.11e-84C2H2 family protein