PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g28620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 386aa MW: 44474 Da PI: 7.826 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 71 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cgk F+ L +H+ H Tp6g28620 71 FRCGECGKGFRYEKCLSNHQAGmH 94 89*****************98666 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 284 | 306 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k Fs++ L H+ H Tp6g28620 284 HQCRLCNKIFSSSQALGGHQTFH 306 79**************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.4E-4 | 71 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.843 | 71 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.037 | 71 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 94 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-4 | 284 | 307 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.034 | 284 | 311 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.54E-7 | 284 | 358 | No hit | No description |
SMART | SM00355 | 0.43 | 284 | 306 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 286 | 306 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.034 | 336 | 363 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.8E-7 | 336 | 358 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.7 | 336 | 358 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 338 | 358 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MEEEHQNLDE PIFGVRRNLK NAQSREEEEE ESIHHQQRDL SCYYGLRENP KKKTQNSFEL 60 ESREPRKKIL FRCGECGKGF RYEKCLSNHQ AGMHSSTSQR VYEESIKSLC SSFCLVRKKK 120 RSRVIRYKKT PLSYSFTTVL ESPSFSVEND EDLEVAECLI LLSKSSPKFV LEAVKLVDEA 180 MDANPETPSG FKSYRKLRKA AEFEYGFLSN EQKLLKEEET SSDEPSTEPA SSLGHKCELD 240 QWKLPKPCHF ESGFYRTELG VRAMERPDSD TDIVTESGKR DVEHQCRLCN KIFSSSQALG 300 GHQTFHRISR SKKKKSYRDE SVETGDESME KEKKKHKCST CSRSFRSVHA LGGHKKCHGK 360 RQQSKAEHDE DMELLSVVPL TVGIEF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g28620 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400068.1 | 1e-171 | zinc finger protein 485 | ||||
TrEMBL | V4N7C8 | 1e-170 | V4N7C8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400068.1 | 1e-171 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7519 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15480.1 | 1e-84 | C2H2 family protein |