PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g28260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | CO-like | ||||||||
Protein Properties | Length: 360aa MW: 40100.3 Da PI: 6.9238 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.3 | 2.4e-06 | 12 | 54 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 + C+++ + + +C+ ++ +lC +C + H H++v Tp6g28260 12 QACDTCRSAACTVYCRADSAYLCTNCDAQVHAAnrvasrHERV 54 57******99*********************556677778776 PP | |||||||
2 | zf-B_box | 34.7 | 3.8e-11 | 54 | 99 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ +fC+ + lC C +++H+ H++vp+ Tp6g28260 54 VRVCESCERAPAAFFCKADAASLCTACDSHIHSAnplarrHQRVPI 99 689*****************************66899999**9997 PP | |||||||
3 | CCT | 67.4 | 4e-23 | 291 | 335 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++e Tp6g28260 291 REARVLRYREKKKTRKFEKTIRYASRKAYAEKRPRIKGRFAKRKE 335 9*****************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.865 | 9 | 56 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.1E-8 | 9 | 56 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.68E-8 | 14 | 56 | No hit | No description |
PROSITE profile | PS50119 | 12.301 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.5E-9 | 54 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.35E-10 | 55 | 99 | No hit | No description |
SMART | SM00336 | 3.7E-12 | 57 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.668 | 291 | 333 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.0E-17 | 291 | 333 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MLKQESSSNW AQACDTCRSA ACTVYCRADS AYLCTNCDAQ VHAANRVASR HERVRVCESC 60 ERAPAAFFCK ADAASLCTAC DSHIHSANPL ARRHQRVPIL PISVNSYGSM ATIHSSETTV 120 TTGPENRVVV GQEEEDEDED EAEAASWLLP SSWKNSGNNN NSQNNGFSIG DEYLDLVDYN 180 SSSDKQFTDQ SNQYQQDYNL PQRSYGGDGV VPLQVEASKR HMPHEQHNFQ FGFTNVCSGP 240 HRSSNGSLSH MVSLVAESTT SDTTVSHPRS PKAATDQLPE PPTQMLSPMD REARVLRYRE 300 KKKTRKFEKT IRYASRKAYA EKRPRIKGRF AKRKEVDAEA DQAFSTTIMF DTGYGIVPSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g28260 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240101 | 0.0 | AC240101.1 Sisymbrium irio clone SIR-39M12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400111.1 | 0.0 | zinc finger protein CONSTANS-LIKE 1 | ||||
Swissprot | O50055 | 0.0 | COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | A0A087G7H1 | 0.0 | A0A087G7H1_ARAAL; Uncharacterized protein | ||||
STRING | A0A087G7H1 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15850.1 | 1e-160 | CONSTANS-like 1 |
Publications ? help Back to Top | |||
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