PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g27310
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 480aa    MW: 53126.1 Da    PI: 5.203
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g27310genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.6e-35281202103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ ++e++sws+ +nsfvv++  ef+k +LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ i 
     Tp6g27310  28 FLSKTYDMVDDPPTNEVVSWSSGNNSFVVWNVPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQLLKGIV 115
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
     Tp6g27310 116 RRKPS 120
                   *9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3823111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3424117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.8E-5824117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-3028117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MESVRESIPS ANSNSSSIPP PVSSVPPFLS KTYDMVDDPP TNEVVSWSSG NNSFVVWNVP  60
EFSKVLLPKY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKQL LKGIVRRKPS  120
HVQQNQQQTQ VQNSSVSACV EVGKFGIEEE VERLKRDKNV LMQELVRLRQ QQQATEHQLQ  180
NVGQKVQVME QRQQQMMSFL AKAVQSPGFL NQLVQQNNDG NRHIQGSNKK RRLPGDEQEN  240
CGVHGANGLN RQIVKYQPSI NEAAQTMLQQ FLNTSSLPRC ESVSNNPDSF LLGNTPNSNS  300
VNSSDRVSGV TLAEVSPNSA HSAMNQVHEA GLAHHPQAGL VQPNLGPSPS QGVAAAASWS  360
PESDLVGCET GNGECFDPIM AALGGSLKIE SDEISPGGEG EMNELLNGVP KLPGVQDPFW  420
EQFFADETPV IGDRDDILSG PVENSDLVME QEPNEWTRNQ QQMNHLTKQM GLLSSETQRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-262312015123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g27310
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY140680.0Y14068.1 Arabidopsis thaliana mRNA for heat shock factor 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400223.10.0heat stress transcription factor A-1b
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLV4N7P10.0V4N7P1_EUTSA; Uncharacterized protein
STRINGXP_006400223.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]