PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g26910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 724aa MW: 80932 Da PI: 7.208 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 27 | 79 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++q+++Le++F+++++p++++r++L ++l+L +q+k+WFqN+R++ k Tp6g26910 27 YHRHSNHQIQRLESYFKECPHPDESQRRKLGEELKLRPKQIKFWFQNKRTQAK 79 67899*********************************************988 PP | |||||||
2 | START | 129.5 | 3.9e-41 | 240 | 461 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS START 3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 + +a +e+vk++ eep+W+kss ++en+++ +k +k+ ++e ++++ vv+ ++ +lv ++d+ +W + + +a+t++v+++ Tp6g26910 240 MISAVTEVVKLIRIEEPMWTKSSidgrlviDQENYEIAFTKTNHTKNpsARIESSKEVLVVPIDARNLVDMFFDTE-KWARLFStivnEAKTINVLEPId 338 567899************************************9988899***************************.77777777777888888877766 PP ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHH CS START 89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllr 182 ++ lm+ +l lsplvp R+fv++R+++ql+++ wvi+dvS + + + + + ++pSg++i+ ++ng skvtw+eh+++++++ h ++r Tp6g26910 339 pqrkNFSKLMYEQLHILSPLVPpREFVILRCCQQLEDDLWVIADVSCHHVHYDF-EFETQTCSKRPSGCVIQALPNGLSKVTWMEHMEVNDKVRtHRIYR 437 77**999*********************************************99.799999********************************99***** PP HHHHHHHHHHHHHHHHHTXXXXXX CS START 183 slvksglaegaktwvatlqrqcek 206 ++ g +ga++w+ tl+r ce+ Tp6g26910 438 DFLCGGFGFGARRWTVTLERMCER 461 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.6E-17 | 8 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.4E-18 | 8 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.034 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-16 | 23 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.69E-15 | 24 | 82 | No hit | No description |
Pfam | PF00046 | 7.3E-16 | 27 | 79 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 40.972 | 229 | 464 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-28 | 230 | 462 | No hit | No description |
CDD | cd08875 | 1.01E-90 | 233 | 460 | No hit | No description |
SMART | SM00234 | 1.7E-27 | 238 | 461 | IPR002913 | START domain |
Pfam | PF01852 | 3.4E-34 | 240 | 461 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-9 | 291 | 426 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.51E-10 | 484 | 688 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MDSSRDSSSS DENETSMNTN NGDKKIYHRH SNHQIQRLES YFKECPHPDE SQRRKLGEEL 60 KLRPKQIKFW FQNKRTQAKA QSEKADNASL RAENLKIRRE NEALKESLKT VTCPPCGGPR 120 LGPEERELEL QRLRLQNVHL KEQRDKIASL VSNNGGRSIP NVNALAHLPG PSSFASSSNT 180 PHASAGTSSN HPVEPPTLVR EPYTREQINI AQPPQPQKPL ELQQFQSLSQ MEKVMMSETM 240 ISAVTEVVKL IRIEEPMWTK SSIDGRLVID QENYEIAFTK TNHTKNPSAR IESSKEVLVV 300 PIDARNLVDM FFDTEKWARL FSTIVNEAKT INVLEPIDPQ RKNFSKLMYE QLHILSPLVP 360 PREFVILRCC QQLEDDLWVI ADVSCHHVHY DFEFETQTCS KRPSGCVIQA LPNGLSKVTW 420 MEHMEVNDKV RTHRIYRDFL CGGFGFGARR WTVTLERMCE RLSLSSISVF PTTDYGGVVK 480 TIEGRRSVMS LGERMLKNFA WILKMSKKYD FSQLSETNSS GIRVSVRVNS EAGQPIGLIV 540 CAGSSLCLPL SPLKVYNFLK NLDVRHQWDV LCHGNPAAEV ARFDTGADNK NCVTMLQPSS 600 ATESADMMII QDSFIDALGG MVVYAPVDLN TAYAAVSGQV DPSGIAILPS GFVISRDGRS 660 SASAELDGGR DSSTTLLTVA FQILVSGPAA CEDLQIKEST ATVNTLVSST VQRIKAMLNC 720 DDGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g26910 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619236.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG9-like | ||||
Refseq | XP_022551076.1 | 0.0 | homeobox-leucine zipper protein HDG9-like isoform X1 | ||||
Swissprot | Q9FFI0 | 0.0 | HDG9_ARATH; Homeobox-leucine zipper protein HDG9 | ||||
TrEMBL | A0A3N6R7D8 | 0.0 | A0A3N6R7D8_BRACR; Uncharacterized protein | ||||
STRING | Bo2g013570.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8468 | 15 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17320.1 | 0.0 | homeodomain GLABROUS 9 |
Publications ? help Back to Top | |||
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