PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g26910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 724aa    MW: 80932 Da    PI: 7.208
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g26910genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-182779456
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++++++q+++Le++F+++++p++++r++L ++l+L  +q+k+WFqN+R++ k
  Tp6g26910 27 YHRHSNHQIQRLESYFKECPHPDESQRRKLGEELKLRPKQIKFWFQNKRTQAK 79
               67899*********************************************988 PP

2START129.53.9e-412404613206
                HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS
      START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 
                + +a +e+vk++  eep+W+kss       ++en+++  +k   +k+   ++e ++++ vv+ ++ +lv  ++d+  +W + +     +a+t++v+++  
  Tp6g26910 240 MISAVTEVVKLIRIEEPMWTKSSidgrlviDQENYEIAFTKTNHTKNpsARIESSKEVLVVPIDARNLVDMFFDTE-KWARLFStivnEAKTINVLEPId 338
                567899************************************9988899***************************.77777777777888888877766 PP

                ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHH CS
      START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllr 182
                    ++  lm+ +l  lsplvp R+fv++R+++ql+++ wvi+dvS  +  +   + +   + ++pSg++i+ ++ng skvtw+eh+++++++  h ++r
  Tp6g26910 339 pqrkNFSKLMYEQLHILSPLVPpREFVILRCCQQLEDDLWVIADVSCHHVHYDF-EFETQTCSKRPSGCVIQALPNGLSKVTWMEHMEVNDKVRtHRIYR 437
                77**999*********************************************99.799999********************************99***** PP

                HHHHHHHHHHHHHHHHHTXXXXXX CS
      START 183 slvksglaegaktwvatlqrqcek 206
                 ++  g  +ga++w+ tl+r ce+
  Tp6g26910 438 DFLCGGFGFGARRWTVTLERMCER 461
                **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-17881IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-18875IPR009057Homeodomain-like
PROSITE profilePS5007116.0342181IPR001356Homeobox domain
SMARTSM003894.1E-162385IPR001356Homeobox domain
CDDcd000861.69E-152482No hitNo description
PfamPF000467.3E-162779IPR001356Homeobox domain
PROSITE profilePS5084840.972229464IPR002913START domain
SuperFamilySSF559611.92E-28230462No hitNo description
CDDcd088751.01E-90233460No hitNo description
SMARTSM002341.7E-27238461IPR002913START domain
PfamPF018523.4E-34240461IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-9291426IPR023393START-like domain
SuperFamilySSF559611.51E-10484688No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MDSSRDSSSS DENETSMNTN NGDKKIYHRH SNHQIQRLES YFKECPHPDE SQRRKLGEEL  60
KLRPKQIKFW FQNKRTQAKA QSEKADNASL RAENLKIRRE NEALKESLKT VTCPPCGGPR  120
LGPEERELEL QRLRLQNVHL KEQRDKIASL VSNNGGRSIP NVNALAHLPG PSSFASSSNT  180
PHASAGTSSN HPVEPPTLVR EPYTREQINI AQPPQPQKPL ELQQFQSLSQ MEKVMMSETM  240
ISAVTEVVKL IRIEEPMWTK SSIDGRLVID QENYEIAFTK TNHTKNPSAR IESSKEVLVV  300
PIDARNLVDM FFDTEKWARL FSTIVNEAKT INVLEPIDPQ RKNFSKLMYE QLHILSPLVP  360
PREFVILRCC QQLEDDLWVI ADVSCHHVHY DFEFETQTCS KRPSGCVIQA LPNGLSKVTW  420
MEHMEVNDKV RTHRIYRDFL CGGFGFGARR WTVTLERMCE RLSLSSISVF PTTDYGGVVK  480
TIEGRRSVMS LGERMLKNFA WILKMSKKYD FSQLSETNSS GIRVSVRVNS EAGQPIGLIV  540
CAGSSLCLPL SPLKVYNFLK NLDVRHQWDV LCHGNPAAEV ARFDTGADNK NCVTMLQPSS  600
ATESADMMII QDSFIDALGG MVVYAPVDLN TAYAAVSGQV DPSGIAILPS GFVISRDGRS  660
SASAELDGGR DSSTTLLTVA FQILVSGPAA CEDLQIKEST ATVNTLVSST VQRIKAMLNC  720
DDGK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g26910
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619236.10.0PREDICTED: homeobox-leucine zipper protein HDG9-like
RefseqXP_022551076.10.0homeobox-leucine zipper protein HDG9-like isoform X1
SwissprotQ9FFI00.0HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBLA0A3N6R7D80.0A0A3N6R7D8_BRACR; Uncharacterized protein
STRINGBo2g013570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.10.0homeodomain GLABROUS 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]