PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g26790
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family AP2
Protein Properties Length: 585aa    MW: 64237.9 Da    PI: 6.2025
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g26790genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.5e-15210269155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Tp6g26790 210 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 269
                57*******************999975578446*************************98 PP
2AP248.91.7e-15312363155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+fgt +eAa+a++ a+ k++g
  Tp6g26790 312 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQDEAAEAYDIAAIKFRG 363
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-17210279IPR016177DNA-binding domain
PfamPF008477.8E-12210269IPR001471AP2/ERF domain
CDDcd000183.78E-21210279No hitNo description
PROSITE profilePS5103219.164211277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-15211278IPR001471AP2/ERF domain
SMARTSM003802.1E-29211283IPR001471AP2/ERF domain
PRINTSPR003674.1E-6212223IPR001471AP2/ERF domain
CDDcd000184.88E-23312371No hitNo description
SuperFamilySSF541716.15E-17312372IPR016177DNA-binding domain
PfamPF008471.6E-10312363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-17313371IPR001471AP2/ERF domain
SMARTSM003808.5E-32313377IPR001471AP2/ERF domain
PROSITE profilePS5103218.439313371IPR001471AP2/ERF domain
PRINTSPR003674.1E-6353373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MNSMNNNNWL GFSLSPYDQS HHRTDLDSST TTTAVDVAGE YCYDLTAASD ESSAVQTSLP  60
SPFGVVLDAF TRDNNSHSRD WDINGGACNN IHNNDLNGPK LENFFGRTTT IYNTNENGGD  120
GSGGCGGGDG DGGGAGSLGL SMIKTWLRNQ PVANVDHQDN GNGARGLSLS MNSSTSDSNN  180
NNVVVQEKTI VDSVEATPKK TIGSFGQRTS IYRGVTRHRW TGRYEAHLWD NSCKREGQTR  240
KGRQVYLGGY DKEEKAARAY DLAALKYWGT TTTTNFPMSE YEKEVEEMKH MTRQEYVASL  300
RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFGTQDEA AEAYDIAAIK  360
FRGLSAVTNF DMNRYNVKAI LESPSLPIGS AAKRLKEANH QVRSIMLSNN VSESENNTSG  420
WQNAALQHHQ GMDISLLQQH QERYNGYYNG GSLSSESARA CFKQEEDQHH FLSSSPSLMT  480
NIDHHSSASD DSVTLCGNVV GYGGYQGFAI PVETSVNCDA VTAAEIAYNA RNHYYFAQQL  540
QQQQIQQSPE GDFPVEISNN VGSHMYFHGE GGGEGAPTFT VWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g26790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179040.0AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873828.10.0AP2-like ethylene-responsive transcription factor BBM
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLD7LX050.0D7LX05_ARALL; Predicted protein
STRINGAl_scaffold_0006_16500.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein