PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g26290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | B3 | ||||||||
Protein Properties | Length: 321aa MW: 36972.2 Da PI: 10.0111 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.9 | 2.4e-20 | 19 | 111 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffk+l ++d +++ + ++p +f+++++ + +s++++l+ ++g sW vk+ +k+++ y+ GW++Fv++ngL e++ ++F+++ +++f +v ++ Tp6g26290 19 FFKILRREDLSSEIMRMIPHDFIRSISDN-SSSFKMVLKVPWGSSWPVKI--SKNPSFhYMEDHGWNHFVSDNGLGENEYLTFTHEANMCF--NVNIY 111 99************************766.589*****************..999999567779*********************999**9..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-19 | 14 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-20 | 15 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.68E-19 | 19 | 111 | No hit | No description |
SMART | SM01019 | 1.7E-23 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-18 | 19 | 111 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.507 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-10 | 214 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-12 | 214 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.614 | 215 | 308 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.98E-7 | 216 | 292 | No hit | No description |
SMART | SM01019 | 0.001 | 218 | 308 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MVRNSGFGQI MEEGDNAGFF KILRREDLSS EIMRMIPHDF IRSISDNSSS FKMVLKVPWG 60 SSWPVKISKN PSFHYMEDHG WNHFVSDNGL GENEYLTFTH EANMCFNVNI YESDGKEMLR 120 PRESATIASS SGMNKREQRN GVYKNVKKEE IVSSSESSYP HLRKAESAGS RLKKKREPTL 180 GKKKAEQAEK SKKNKKKKKV DSACKDFEGS TSSLVPEFNL TIRKSHLLFL GIPKKFVDMH 240 MPKETKMFKI HPEGKESWKV LYLVTDAQSR FSAGWSRLAR ELDLVRHYGL LFNVRTDFMI 300 VLDLVSMEES DLSLSEHQKR N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 198 | KKKAEQAEKSKKNKKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g26290 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400343.1 | 1e-150 | B3 domain-containing protein At5g18000 | ||||
Swissprot | Q9FJG2 | 1e-128 | Y5800_ARATH; B3 domain-containing protein At5g18000 | ||||
TrEMBL | V4N7Z1 | 1e-149 | V4N7Z1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400343.1 | 1e-149 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 1e-124 | VERDANDI |
Publications ? help Back to Top | |||
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