PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g25870
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 302aa    MW: 33508.9 Da    PI: 6.1715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g25870genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-193383256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                y+GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a+++a+kkl+g+
  Tp6g25870 33 TYRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83
               69****999.**********8...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.91E-283288No hitNo description
PROSITE profilePS5103220.7323390IPR001471AP2/ERF domain
PfamPF008473.2E-143383IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-203389IPR016177DNA-binding domain
SMARTSM003805.2E-343396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-293389IPR001471AP2/ERF domain
PRINTSPR003677.7E-103445IPR001471AP2/ERF domain
PRINTSPR003677.7E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTYRGVRQR TWGKWVAEIR EPNRGTRLWL  60
GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQQQQVN RNLSFSGHGS GSWPYRFDTV  120
RGLDLGLGPS NGSRSSWSGS FSFLQEDDHH NSDRCLSSSG SNLSWLLPKR SNSQDQESFD  180
AASVCGSEGG CITFSTKLKP NNLMTAPDYG SSNGVWSRFL VGQEKNDVSS SCGSSDNKES  240
ISVPSGRGDG EEGMHRPEME EGTGYLEMDE LLEIDDLGLL IGKNGDFKNW CCDEFQHPWN  300
WF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-153489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g25870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608387.11e-179PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-160DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A078GG201e-178A0A078GG20_BRANA; BnaC09g39350D protein
TrEMBLA0A0D3EED91e-178A0A0D3EED9_BRAOL; Uncharacterized protein
STRINGBo9g155940.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-134ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]