PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g25780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C3H | ||||||||
Protein Properties | Length: 465aa MW: 49444.1 Da PI: 8.2695 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ Tp6g25780 51 DEPDCIYYLRTGVCGYGSRCRFNHPR 76 6899********************96 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f+rtGtCk+G++Ck++H++ Tp6g25780 97 GQPVCQHFMRTGTCKFGASCKYHHPR 122 5789********************96 PP | |||||||
3 | zf-CCCH | 39.8 | 7.4e-13 | 145 | 169 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG+Ck+G++C+F+H+ Tp6g25780 145 GEKECSYYMRTGQCKFGSTCRFHHP 169 7899********************9 PP | |||||||
4 | zf-CCCH | 37.8 | 3.2e-12 | 293 | 318 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++f+rtG Ck+G +C+++H+ Tp6g25780 293 PGQPECQYFMRTGDCKFGTSCRYHHP 318 5789*********************9 PP | |||||||
5 | zf-CCCH | 33.9 | 5.5e-11 | 340 | 364 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C++fa+ G+Ck+G+ CkF H++ Tp6g25780 340 AAPCSHFAQHGICKFGPACKFDHSM 364 589********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.5E-4 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 51 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-6 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.277 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-10 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 100 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-10 | 145 | 169 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 149 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 292 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.77 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 294 | 318 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 296 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 298 | 318 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.464 | 337 | 365 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-6 | 337 | 364 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 340 | 363 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-5 | 340 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 342 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MERYGRAGEE GSRSDPSLEW TATRTETGME ASMWRLGLRG GGGESYPERP DEPDCIYYLR 60 TGVCGYGSRC RFNHPRNRAP VLGGLRTEAG EFPERMGQPV CQHFMRTGTC KFGASCKYHH 120 PRQGGGDSVT TPISLNYMGF PLRPGEKECS YYMRTGQCKF GSTCRFHHPV PPGVQAPSQQ 180 QLSSGPAIYP SLQSQLVPSS QQFGVVIARP QLLPGPYVQS PYGYSQMVLP PGMVPYSGWN 240 PYQASVSAPG TQPSMGSSSV YGITPLSPSA PAYQSGLSSA GLSNKEQSFP QRPGQPECQY 300 FMRTGDCKFG TSCRYHHPLE AASPKDVTLS HIGLPLRPGA APCSHFAQHG ICKFGPACKF 360 DHSMSSSSLS YSPSASSLTD MPVAPYPLGS SSLGTLAPSS SSSSDQRTEL QSSSSTKPKT 420 TTSGGSETVA AGVSSSSSMT GGVTHSEPAE AKNGDSASIE IKTSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g25780 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_197356.2 | 0.0 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Swissprot | Q6NPN3 | 0.0 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A1J3IQY4 | 0.0 | A0A1J3IQY4_NOCCA; Zinc finger CCCH domain-containing protein 58 | ||||
STRING | AT5G18550.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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