PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g24610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 28176.5 Da PI: 8.4576 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +g+WvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g Tp6g24610 21 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 71 699*******.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-13 | 21 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.13E-33 | 21 | 81 | No hit | No description |
SMART | SM00380 | 7.0E-39 | 22 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-19 | 22 | 79 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-28 | 22 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.823 | 22 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-8 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-8 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEHQTTPKQK TKEKSKGNNK TKFVGVRQRP SGKWVAEIKD TTQKIRMWLG TFETAEEAAR 60 AYDEAACLLR GSNTRTNFAN HFPNNSQLSL KIRNLLHQKQ SMKQQQRQQN KPVSSFAECS 120 INYTSTATSV TATTTTTVMP LNNVYRPDSS VILQPQTESV QLPYSWPLVA GFNHHVPLTQ 180 GGEETHGHLN NPNSTDQHLG LADIERQISA SLYAMNGATA YYDNMNAEYA IFDPTDPIWD 240 LPSLSQLFCP T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-15 | 17 | 88 | 9 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g24610 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189186 | 0.0 | AC189186.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001J13, complete sequence. | |||
GenBank | AC189430 | 0.0 | AC189430.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB067F22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013667343.1 | 1e-150 | ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | Q6J9S1 | 1e-147 | RA211_ARATH; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A0A397XL00 | 1e-148 | A0A397XL00_BRACM; Uncharacterized protein | ||||
STRING | Bostr.26527s0221.1.p | 1e-149 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7526 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-134 | related to AP2 11 |
Publications ? help Back to Top | |||
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