PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g22400
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 337aa    MW: 39059.1 Da    PI: 6.5914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g22400genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05240263123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y+Cp+C+ +F ++  +  Hi++ H
  Tp6g22400 240 YSCPKCNDVFDTSQKFAAHISSvH 263
                99******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.515240268IPR007087Zinc finger, C2H2
PROSITE patternPS000280242263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MFSFPNRLNS YGEDTMNLHG SIPIQMNSSF RDHETKMVRS MFNTSDITNH HGLFSSSHAY  60
NCYQDSHLSS SSFGFNNSHV AYQMRENMVS DFVDYFPIND NPHLSQVFIT QTVTKRYSAI  120
VPTSNFITVQ NEYEHARNPN IWNPSLYPPT FVEKQNEILN PAPLNTIFPQ ENSVFPRNLD  180
PFSFSPNHHH DQHVHRRPPV KKRSNPTKRF EGIFDGFDFE EDGEYDGRIH SLPYEKYGPY  240
SCPKCNDVFD TSQKFAAHIS SVHYKNETIE ERAKRYNARN KKRLCKANQA FHGETHNIEP  300
EDRVVEESGG NNNIVTGIEA FQHQQIVKEE PIYDVAN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g22400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400809.11e-176uncharacterized protein LOC18016575
TrEMBLV4LIK21e-174V4LIK2_EUTSA; Uncharacterized protein
STRINGXP_006400809.11e-175(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-120C2H2-like zinc finger protein