PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g22030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ARF | ||||||||
Protein Properties | Length: 791aa MW: 87737.6 Da PI: 6.5546 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.7 | 2.7e-24 | 174 | 275 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F +++++el++ Tp6g22030 174 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RDEDGELRL 270 99****************************963.3445679************************************************..5699999** PP EEE-S CS B3 95 kvfrk 99 +++r+ Tp6g22030 271 GIRRS 275 **996 PP | |||||||
2 | Auxin_resp | 124.2 | 9.1e-41 | 297 | 378 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pra+++eFv+++ek+ +++++++++G+Rf+m+fe++ds+err++G+v+gv d+dp+rWpnSkWr+L Tp6g22030 297 VANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRNPICIGTRFRMRFEMDDSPERRCAGVVTGVCDMDPYRWPNSKWRCL 378 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-41 | 165 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-42 | 168 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.18E-21 | 172 | 274 | No hit | No description |
Pfam | PF02362 | 2.9E-22 | 174 | 275 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-23 | 174 | 276 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.437 | 174 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.0E-34 | 297 | 378 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 4.91E-10 | 666 | 743 | No hit | No description |
PROSITE profile | PS51745 | 21.899 | 668 | 750 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 791 aa Download sequence Send to blast |
MEFDLNTEIA EVEEEENDDG GVVGTRIEKG RLGISLSSSS SCSSGSSSSS SSTASASSIY 60 SELWHACAGP LTSLPKKGNV VVYFPQGHLE QDAMVSYSSP LQTPKFDLHP QLFCRVVNVQ 120 LLANKETDEV YTQVTLLPLQ ECSMQNAEGK EVRELGGDEE RNGSSSVKRT PHMFCKTLTA 180 SDTSTHGGFS VPRRAAEDCF APLDYKQQRP SQELIAKDLH GVEWKFRHIY RGQPRRHLLT 240 TGWSIFVSQK NLVSGDAVLF LRDEDGELRL GIRRSARPRN GLPDSVIEKN SNILSLVANA 300 VSTKSMFHVF YSPRATHAEF VIPYEKYITS IRNPICIGTR FRMRFEMDDS PERRCAGVVT 360 GVCDMDPYRW PNSKWRCLLV RWDESFMSDH QERVSPWEID PSVSLPPLSI QSSPRPKRPW 420 AGLLDTTPPG NPIAGRGGFL DFEESVRPSK VLQGQENIGS ASSLHGFDVM NRRILDFAMQ 480 SHANPVLLSS RVKDRFGEFV DSTSLDPAFS GVMDLDRFPR VLQGQEICSL RAFPQIAGLS 540 PAAASGKPNL GYTDAFAYQA NKSSFYPLES QGIRSTHIPY QNPHNGGDKS SGHPSRAINS 600 TGKTRKFDAQ NEDGLPKNVT ADLPFKIDMM GKQKGGDFNM SASTGCKLFG FSLPVEAPAS 660 NRQSSSKRIC TKVHKQGSLV GRAIDLSRLN GYNDLLTELE RLFNMEGLLR DPEKGWRILY 720 TDSENDMMVV GDDPWHDFCN VVLKIHLYTK EEVENANDDN KSCLEQAALM MEASKSSSVS 780 QPDSSPTVTR V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-115 | 42 | 401 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 1e-115 | 42 | 401 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 1e-115 | 42 | 401 | 2 | 354 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g22030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080832 | 0.0 | AY080832.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. | |||
GenBank | AY113977 | 0.0 | AY113977.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400848.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | V4N965 | 0.0 | V4N965_EUTSA; Auxin response factor | ||||
STRING | XP_006400848.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |