PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g19750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ARR-B | ||||||||
Protein Properties | Length: 649aa MW: 72434.1 Da PI: 5.1591 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.7 | 3e-29 | 199 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W++eLH++Fv+av+qL G +kA+Pk+il++m+++gLt+e+v+SHLQkYRl Tp6g19750 199 KPRVVWSQELHQKFVNAVQQL-GLDKAVPKKILDFMNIEGLTRENVASHLQKYRL 252 79*******************.********************************8 PP | |||||||
2 | Response_reg | 69.8 | 1.2e-23 | 20 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+ek +Dl++ D+emp+ dG++ll+ e ++lp+i+++ah++ + + + + Ga Tp6g19750 20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLREKSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMKGIIHGAC 113 799********************.***************999999******************985344..57************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l+Kp++ +el++ Tp6g19750 114 DYLVKPVSLKELRN 127 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.7E-172 | 1 | 648 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 9.3E-35 | 17 | 166 | No hit | No description |
SuperFamily | SSF52172 | 1.08E-30 | 17 | 134 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 9.1E-27 | 18 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 39.181 | 19 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.6E-21 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.00E-20 | 42 | 132 | No hit | No description |
SuperFamily | SSF46689 | 2.42E-20 | 196 | 256 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.787 | 196 | 255 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 197 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-26 | 199 | 252 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.2E-9 | 201 | 251 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MESLSTEEAR TEQFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMES KKALEMLREK 60 SNMFDLVISD VEMPDTDGFK LLEIGLEMDL PVIMLSAHSD YDSVMKGIIH GACDYLVKPV 120 SLKELRNIWQ HVVKKNIGSY KKYIGPSRQL LPSSESAPNG SRKRKEKVND SGDEDDSDRE 180 EEDDEGSEHD GEESSTRKKP RVVWSQELHQ KFVNAVQQLG LDKAVPKKIL DFMNIEGLTR 240 ENVASHLQKY RLYLKKIDEG QQQNMTPDAF GTRDSSYFHM AQLDGLRDFT STRQLPSSSL 300 LSRSHLTKFQ PSVYSSINHL QGSNSSSFIQ QGHHQNSSNS ANPFGTYHRP LLPRSQSVNL 360 SPLEPLQFPR SKCSAYMGEF KGIGDRAIGS SFLDSRMSFG SSSTSLPSAS SNNLMLQENF 420 TQPLHRASDG NQSCLEGALS NSGSPNISVD GLPRFPSHSW QGNLKTTRFP SNSLPLNHAF 480 SQDQVTCAGN GLGDYNTSLV SAENPVGVMQ CEPPLIGDFM QNMNTLDGLK WEEQNCTMLN 540 NPFGNVEYPL PADNMVFRDS NPTKSKGLDD SLMMSPIEDS ATSLNSREYV GNLTMLDPEM 600 KLGKPENALV DNQQHDVFDD IMNEMLKQDE NNGMVSVATR FGLDSFPPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-23 | 195 | 257 | 1 | 63 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 166 | RKRKEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00057 | PBM | Transfer from AT5G58080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g19750 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483380.1 | 0.0 | PREDICTED: two-component response regulator ARR18 | ||||
Swissprot | Q9FGT7 | 0.0 | ARR18_ARATH; Two-component response regulator ARR18 | ||||
TrEMBL | D7MPK5 | 0.0 | D7MPK5_ARALL; Two-component response regulator | ||||
STRING | XP_010483380.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14282 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58080.1 | 0.0 | response regulator 18 |