PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g19690
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 289aa    MW: 30398.1 Da    PI: 6.9376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g19690genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-12100145555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  Tp6g19690 100 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 145
                99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-1793154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-1293149No hitNo description
PROSITE profilePS5088817.02895144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1697154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9100145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MENGNGEAKG EFVNQNNNND FFLDSMSMLS SLPPCWDSSL PPPPPPPPHS LFHALTESGG  60
PTIGSQDGLQ AQGTVSTTSA PVVRQKPRVR ARRGQATDPH SIAERLRRER IAERMKSLQE  120
LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG AVGPRLNGLT SEVGGRLNAL  180
SGPCNSVSGN GNPTGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS  240
STSSHSRGAL FNPNPNSVAA ENANVAVAAA AATAPEASST MDDVSASKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g19690
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866244.11e-172transcription factor bHLH82
SwissprotQ9LSQ31e-171BH082_ARATH; Transcription factor bHLH82
TrEMBLD7MNY81e-171D7MNY8_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh1_pm.C_scaffold_80014351e-171(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-116LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]