PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g19350
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CO-like
Protein Properties Length: 359aa    MW: 39246.9 Da    PI: 6.2371
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g19350genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.1e-081957339
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
               +r C+ +++  +  fC+ ++ +lC +C + +H+   H++
  Tp6g19350 19 ARSCDACKSVSAAVFCRVDSAFLCITCDTRIHSFtrHER 57
               578******99*********************6577876 PP
2zf-B_box28.14.3e-0958103342
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                 ++C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
  Tp6g19350  58 VWVCEVCEQAPAAVTCKADAAALCVTCDSDIHSAnplasrHERVPV 103
                689*****************************66999999999986 PP
3CCT70.25.4e-24291335145
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++e
  Tp6g19350 291 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRSE 335
                9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.1E-71760IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0821760IPR000315B-box-type zinc finger
CDDcd000217.40E-82060No hitNo description
PfamPF006431.0E-62058IPR000315B-box-type zinc finger
PROSITE profilePS5011910.72256103IPR000315B-box-type zinc finger
PfamPF006434.4E-757103IPR000315B-box-type zinc finger
CDDcd000211.40E-859103No hitNo description
SMARTSM003364.6E-1061103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.817291333IPR010402CCT domain
PfamPF062035.5E-18291333IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGFGLENIKS ISGGWGAAAR SCDACKSVSA AVFCRVDSAF LCITCDTRIH SFTRHERVWV  60
CEVCEQAPAA VTCKADAAAL CVTCDSDIHS ANPLASRHER VPVESFFDSA ETAVAKISAS  120
TFGILGSSAT VDLTAVPVMG NSDELGLCPW LLPNDFNEPA KIEIGTEMKS SEFMFSDFDR  180
LIDFEYPNTF NHQPPHNSAG ADSLVPVQTK TEPVPVTNND HCFDIDFCRS KLSAFTYPTQ  240
SISHSVSTSS PEYGVVPDGN TSVSEISIPF NRSTITGSTT TTGDQTSSMD REARVLRYRE  300
KRKNRKFEKT IRYASRKAYA ESRPRIKGRF AKRSETGNDD VFLSHVYASA AQYGVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g19350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526790.0AK352679.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401182.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH80.0COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLV4KXA90.0V4KXA9_EUTSA; Uncharacterized protein
STRINGXP_006401182.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.10.0CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]