PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g19220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 150aa MW: 16921.7 Da PI: 7.0411 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.4e-05 | 52 | 74 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Tp6g19220 52 FSCNYCQRKFYSSQALGGHQNAH 74 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.78E-6 | 49 | 79 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 52 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 54 | 74 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MDFQPNTSLH LSLPSYKNHQ LNLELVLEPS SMSSSSSSST NSSSCLEQPR VFSCNYCQRK 60 FYSSQALGGH QNAHKLERTL AKKSRELFRS STTVDSDQPY PFSGRFELYG RGYEGFVESA 120 APRDFSGRRV PESGLDQDQE MSHLDLSLRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g19220 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB011482 | 1e-170 | AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2. | |||
GenBank | ATHZFPB | 1e-170 | L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds. | |||
GenBank | CP002688 | 1e-170 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010443438.1 | 5e-92 | PREDICTED: zinc finger protein 2 | ||||
Swissprot | Q39261 | 1e-88 | ZFP2_ARATH; Zinc finger protein 2 | ||||
TrEMBL | A0A078FFX0 | 2e-90 | A0A078FFX0_BRANA; BnaC03g12900D protein | ||||
TrEMBL | A0A087GBP9 | 2e-90 | A0A087GBP9_ARAAL; Uncharacterized protein | ||||
TrEMBL | A0A0D3B2Z7 | 2e-90 | A0A0D3B2Z7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397ZTX3 | 6e-90 | A0A397ZTX3_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6A550 | 2e-90 | A0A3P6A550_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6AJV1 | 2e-90 | A0A3P6AJV1_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4CRH4 | 2e-90 | M4CRH4_BRARP; Uncharacterized protein | ||||
TrEMBL | R0GS96 | 9e-90 | R0GS96_9BRAS; Uncharacterized protein | ||||
STRING | XP_010443438.1 | 2e-91 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6621 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 7e-89 | zinc finger protein 2 |