PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g18880
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 246aa    MW: 28038.5 Da    PI: 4.3919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g18880genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-135699755
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  Tp6g18880 56 LSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99
               57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2344998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1751114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.99E-135299No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1655114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MESIDQEFNN YWESNSFLQN GDFEYDSWPL EEAISGSYDS SSPDGATSSP ASKNILSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EETKLESEIR ELESTPKSSL  120
SFSKDFDRDL LVPVTSKKMK QLDSCSSRYL IEVLELKVTF MGERTMVVNV TCNKRTDTMV  180
KLCEVFESLN LKILTSNLNS FSGMIFNTLF IEADEEEQEV VRLKIETGIG AYNETQSPTL  240
SIDSLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1554108963Transcription factor MYC2
5gnj_B6e-1554108963Transcription factor MYC2
5gnj_E6e-1554108963Transcription factor MYC2
5gnj_F6e-1554108963Transcription factor MYC2
5gnj_G6e-1554108963Transcription factor MYC2
5gnj_I6e-1554108963Transcription factor MYC2
5gnj_M6e-1554108963Transcription factor MYC2
5gnj_N6e-1554108963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g18880
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464656.11e-167PREDICTED: transcription factor bHLH35 isoform X1
SwissprotQ2HIV91e-162BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A087GBL81e-167A0A087GBL8_ARAAL; Uncharacterized protein
STRINGA0A087GBL81e-168(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-166bHLH family protein