PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g18670
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 472aa    MW: 52830.8 Da    PI: 9.9278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g18670genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11297342555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L  A e + sLq
  Tp6g18670 297 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLAIAREQLTSLQ 342
                8899********************97.....799*********99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-15284356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.557292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-10294346No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14296362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MHLFFLSCSY LISLDGYYNE APQEPSTSSG SLARRLFHEY LQSIIPLQNG HIPSMAFMNN  60
LPYLEIRPQD TQRLAYNNAQ RLFYQMKIEA SLREWFPEDF SRKPSPVNSE NLRPPPPPSS  120
SSSSLRSLDS PQNVSEYSSL LFPLIPKPST TTDAVNFPLH PLLAPVTTAT TANMIHQQQQ  180
ESLFRNSERE EEAMTQAILA VLSASSSPPS TSSSPQRKGR ATAFKRYYCM ISGGGGTGRA  240
PQPPSGRRQS MMKRAISFYN RLNMYRRERF AMENATGGGD ASGGSGGRGP TATQLHHMIS  300
ERKRREKLNE SFQALRSLLP PGTKKDKASV LAIAREQLTS LQGEIAKLQK RNQELEAKLA  360
GEGEMINDLR PNERFNVRIR HIPESTSRGR VLDLRVVLRG DNVRADDLII RLLEFLKQIN  420
NVSLVSIDAQ TRAREVGDTS VVLVSLRLNI EGEYDESAFQ EAVRRVVADL AH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305ERKRRE
2301306RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g18670
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619569.10.0PREDICTED: putative transcription factor bHLH041
RefseqXP_013673259.10.0putative transcription factor bHLH041
RefseqXP_022569086.10.0putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A1J3HIU60.0A0A1J3HIU6_NOCCA; Uncharacterized protein (Fragment)
STRINGAl_scaffold_0008_21430.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]