PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g18550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 25453.8 Da PI: 9.7724 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.4 | 2.9e-12 | 96 | 140 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + ++++ q+ s+ qky Tp6g18550 96 PWTEEEHRTFLIGLEKLGKGDWRGISRNFVVTKSPTQVASHAQKY 140 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.60.10 | 5.2E-4 | 3 | 20 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.532 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.648 | 88 | 145 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.96E-16 | 91 | 145 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-18 | 92 | 144 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-8 | 93 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-10 | 93 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-10 | 96 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.29E-8 | 96 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGRRCSHCGN IGHNSRTCSS YKTRVIRLFG VHVDTTGLSL PPPPPLPPPS SILAAVMKKS 60 FSMDCLPACS SSSSSFAGYL SDGLTHKTPD RKKGVPWTEE EHRTFLIGLE KLGKGDWRGI 120 SRNFVVTKSP TQVASHAQKY FLRQATTLHH KRRRTSLFDM VSAGNVEENS TISCNDHIVS 180 TREAVWKQQG LSNSCPGYPD PGISGSDNSG GLDLDLKLAS LQSSQSNIRP ISVT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g18550 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010451524.1 | 1e-133 | PREDICTED: uncharacterized protein LOC104733656 | ||||
Refseq | XP_013609825.1 | 1e-133 | PREDICTED: uncharacterized protein LOC106316480 | ||||
Refseq | XP_013729123.1 | 1e-133 | transcription factor MYBS3-like | ||||
Swissprot | Q7XC57 | 4e-45 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A0D3EBW0 | 1e-131 | A0A0D3EBW0_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g127350.1 | 1e-132 | (Brassica oleracea) | ||||
STRING | XP_010451524.1 | 1e-132 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5496 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 1e-124 | MYB_related family protein |
Publications ? help Back to Top | |||
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