PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g18400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 221aa MW: 25084 Da PI: 9.4727 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.9 | 1.4e-21 | 10 | 95 | 57 | 128 |
NAM 57 ewyfFskrdkkyatgkrknra.............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +fF++ +++y+tg+rk+r+ ++ +W++tgk+++v+ +g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l Tp6g18400 10 SKHFFHRPSRAYTTGTRKRRKiiqtdhdseltgsSTETRWHKTGKTRPVMI-NGRQRGCKKILVLYtnYGKNRRPEKTNWVMHQYHL 95 679*****************889*****99988755789************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.423 | 1 | 114 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-23 | 6 | 114 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-7 | 12 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MFGVTNDGLS KHFFHRPSRA YTTGTRKRRK IIQTDHDSEL TGSSTETRWH KTGKTRPVMI 60 NGRQRGCKKI LVLYTNYGKN RRPEKTNWVM HQYHLGINEE EREGELVVSK IFYQTQPRQC 120 VGNINWSDHH GSSKDLIRIG AGDEISGVAA ALQSLGSGDV VSKQQLRGRS SRSGLEDVIM 180 GCTATCTEDE NSEAIPQQNA DWLTFPPFWN QTESDGQNRR F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g18400 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013392 | 1e-163 | AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19. | |||
GenBank | CP002688 | 1e-163 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018456809.1 | 1e-105 | PREDICTED: NAC domain-containing protein 73 isoform X1 | ||||
Refseq | XP_018456810.1 | 1e-105 | PREDICTED: NAC domain-containing protein 73 isoform X1 | ||||
Refseq | XP_018456811.1 | 1e-105 | PREDICTED: NAC domain-containing protein 73 isoform X2 | ||||
Swissprot | Q9M0F8 | 4e-66 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | V4KXM2 | 1e-104 | V4KXM2_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_006401302.1 | 1e-105 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14928 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56620.1 | 1e-103 | NAC domain containing protein 99 |
Publications ? help Back to Top | |||
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