PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g18050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 435aa MW: 47620.6 Da PI: 7.0034 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F + L H r H Tp6g18050 86 HTCSECGKRFVSGKALGGHKRIH 108 79**************9999998 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 282 | 304 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+ksF++ L H +H Tp6g18050 282 HVCVTCNKSFTSYQALGGHRASH 304 79**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-6 | 83 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.22E-9 | 84 | 159 | No hit | No description |
PROSITE profile | PS50157 | 11.78 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.4E-9 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.03 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.559 | 137 | 159 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.4 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0015 | 138 | 160 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.93E-8 | 281 | 304 | No hit | No description |
PROSITE profile | PS50157 | 9.556 | 282 | 309 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.8E-10 | 282 | 306 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.37 | 282 | 304 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 284 | 304 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.93E-8 | 346 | 373 | No hit | No description |
Pfam | PF13912 | 6.4E-13 | 351 | 374 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 351 | 373 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.078 | 351 | 373 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 353 | 373 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MEQSRGYKAN CGFSLERPRF GSIKVKIPNF EPFIAEERKD IEEDQAEDDE EEAGIIGLKE 60 KEEEDDDGAK SMDLEEGDEE EVEKKHTCSE CGKRFVSGKA LGGHKRIHVL ETRKFAMVRP 120 KMMSGMVGRS ERGEFETNCC VCLKKFTSMK ALYGHMRFHP DRGWKGVLPP PHPLGWPATG 180 KRGRRSALKV DKSDLKDPPS KGMKDIDAKD LLFLATTAEA VNLDVAEASD SHSVEEMMKK 240 RKKRKKRLSE MEKESSSTHD HHQVEGVVAA AAEESGGARE KHVCVTCNKS FTSYQALGGH 300 RASHNKVKIL ENHQARANGE ASLLGTEAMI TGLTSVQGSN TSLSSSNNGD HVCNICHKSF 360 PTGQALGGHK RCHWTGPVSS EAATSAPIAA TAAPTAATAP AAAPSSQVTE IVQEVKRLKR 420 AFLDFDLNEL PPNEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 246 | KKRKKRKKR |
2 | 240 | 246 | RKKRKKR |
3 | 241 | 245 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g18050 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC241194 | 1e-165 | AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455488.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | A0A1J3K9D0 | 0.0 | A0A1J3K9D0_NOCCA; Zinc finger protein ZAT6 | ||||
STRING | Bra035609.1-P | 1e-150 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6618 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 4e-79 | C2H2 family protein |