PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g16640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 25519.9 Da PI: 8.8356 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 4.9e-12 | 75 | 122 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RRdr+N++f eL +l + + +K +Ka+iL Av+ +++L Tp6g16640 75 SKACREKQRRDRLNDKFMELGVILEPG---NPPKTDKAAILVDAVRMVSQL 122 5678**********************8...78*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-13 | 63 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.85E-9 | 69 | 127 | No hit | No description |
PROSITE profile | PS50888 | 13.3 | 71 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-13 | 74 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 75 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-9 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00608 | 137 | 169 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MVSPENANWI CDLIDADYGS FTIQGSGFSW PVQQPIGVSS NSSVGVDGSA GNSEASKEPG 60 SKKRARCESS SATSSKACRE KQRRDRLNDK FMELGVILEP GNPPKTDKAA ILVDAVRMVS 120 QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP 180 APPMMPTAFA SAQGQAPGNK MVPVISYPGV AMWQFMPPAS VDTSQDHVLR PPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g16640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352726 | 0.0 | AK352726.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_200279.1 | 1e-169 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | XP_020888968.1 | 1e-169 | transcription factor ILR3 | ||||
Refseq | XP_023637746.1 | 1e-169 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-170 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A178UAU8 | 1e-168 | A0A178UAU8_ARATH; ILR3 | ||||
TrEMBL | D7MUC3 | 1e-168 | D7MUC3_ARALL; Uncharacterized protein | ||||
TrEMBL | R0GR79 | 1e-166 | R0GR79_9BRAS; Uncharacterized protein | ||||
STRING | AT5G54680.1 | 1e-168 | (Arabidopsis thaliana) | ||||
STRING | fgenesh2_kg.8__1365__AT5G54680.1 | 1e-168 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1437 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-124 | bHLH family protein |