PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp6g16360

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

C2H2

Protein Properties

Length: 422aa MW: 46240.4 Da PI: 9.6705

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp6g16360	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	76	96	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F++ ++L H+ tH Tp6g16360 76 CKICKKGFPNADSLCGHQETH 96 *******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.286	74	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MSPSNSSASK TDQKLKSIVV AMEKKKTTNN LAQGSPQEVS SEKTITEKPS IGLRVVRAAN 60 SMLKNYPPKD NFLPICKICK KGFPNADSLC GHQETHKHDQ ELRRQLKRTE PRNSPRQSFW 120 KKPYKSDQGT SNSVQFGESS QDALQNDKNL WIFRDPVESI RGEGSSVRST TFPSFNSRAT 180 RDNTDIDMTV GRPVAPGTAL VTHNNNLPTL SDFNRLGLSF GPFKSRGGAS SSDFPSLFNG 240 GISMVVPANP CRPLTENTST GSSLRGLLPF YSYNPHAFSF EHSFSKSNLI GSSSSSNNNI 300 NINSKSLGGS NINNSVYPSM NGGVNGGGIT DLNMPVRTLV SRYHFYSYNP LDSITRNVPL 360 SHLPPPPTTN LPNDENISFS GYSKKLIANA KNKNVVLEDD DDDNQPEEVE AKSWGRDLSL 420 SL

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MSPSNSSASK TDQKLKSIVV AMEKKKTTNN LAQGSPQEVS SEKTITEKPS IGLRVVRAAN  60
SMLKNYPPKD NFLPICKICK KGFPNADSLC GHQETHKHDQ ELRRQLKRTE PRNSPRQSFW  120
KKPYKSDQGT SNSVQFGESS QDALQNDKNL WIFRDPVESI RGEGSSVRST TFPSFNSRAT  180
RDNTDIDMTV GRPVAPGTAL VTHNNNLPTL SDFNRLGLSF GPFKSRGGAS SSDFPSLFNG  240
GISMVVPANP CRPLTENTST GSSLRGLLPF YSYNPHAFSF EHSFSKSNLI GSSSSSNNNI  300
NINSKSLGGS NINNSVYPSM NGGVNGGGIT DLNMPVRTLV SRYHFYSYNP LDSITRNVPL  360
SHLPPPPTTN LPNDENISFS GYSKKLIANA KNKNVVLEDD DDDNQPEEVE AKSWGRDLSL  420
SL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp6g16360

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18751	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	3e-23	C2H2 family protein