PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp6g15780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | GRF | ||||||||
Protein Properties | Length: 343aa MW: 39072 Da PI: 7.8922 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.9 | 2e-24 | 78 | 120 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr+v++++k+CErHlhrgr rsrk++e Tp6g15780 78 LEPGRCRRTDGKKWRCSREVVSDHKYCERHLHRGRPRSRKHVE 120 69***************************************97 PP | |||||||
2 | QLQ | 51.2 | 3.8e-18 | 28 | 59 | 2 | 33 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT+aQl +L++Q+++yKy++a+ PvP +Ll+ Tp6g15780 28 PFTNAQLKELERQAMIYKYMIASIPVPFDLLV 59 9*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-10 | 27 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.3E-11 | 28 | 58 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.186 | 28 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.128 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.1E-20 | 79 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEIYPHAHSH VIAPYAGNGV LGCYYYYPFT NAQLKELERQ AMIYKYMIAS IPVPFDLLVS 60 SSSSYAPPCH NKNAAGDLEP GRCRRTDGKK WRCSREVVSD HKYCERHLHR GRPRSRKHVE 120 LPYSRPRNNG GSVKNRDLLN VPQNPSLSSI KDRIVEQREV SSSLPKYIES RGSEIVHVSA 180 TKEEENKYLN FIDIWSDGVR SSEKQSTTST PASSSNGNLS LYSLDLSMGG NNLMGHNEMG 240 LIQMGLGVIG SDREDPHGEE RPDALKRIDQ TEHWDRSDRM SIMIMRIRIP EKFRGIVPED 300 VTTAKQYLAA VEKCYARNER SEMDMVLAEF SSFKKEPDEN VRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp6g15780 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401675.1 | 1e-147 | growth-regulating factor 7 | ||||
Swissprot | Q9FJB8 | 1e-142 | GRF7_ARATH; Growth-regulating factor 7 | ||||
TrEMBL | V4LTC9 | 1e-146 | V4LTC9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006401675.1 | 1e-147 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12106 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 1e-133 | growth-regulating factor 7 |
Publications ? help Back to Top | |||
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