PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g15440
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 362aa    MW: 41287.4 Da    PI: 4.374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g15440genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19126175255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  Tp6g15440 126 KFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 175
                89*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-30125183IPR001471AP2/ERF domain
SMARTSM003801.9E-39126189IPR001471AP2/ERF domain
CDDcd000186.44E-34126182No hitNo description
PROSITE profilePS5103223.591126183IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21126184IPR016177DNA-binding domain
PfamPF008474.9E-12126175IPR001471AP2/ERF domain
PRINTSPR003672.7E-10127138IPR001471AP2/ERF domain
PRINTSPR003672.7E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDEYMDFRPL KYTEHKSSVT KYTKKSPEKI ISGETRPDSV RIVRVSVTDP DATDSSSDEE  60
EDFLFPRRRV KRFVNEIKVE PGCNNVNITG VSMKERKRLS DETQSPASNR HRPLKVSVSS  120
GRNGRKFRGV RQRPWGKWAA EIRDPEQRRR IWLGTFETAE EAAVVYDNAA IRLRGPDAQT  180
NFSIPPQSQD DEEKEEEESE PEQPVIDKPE SHITTTTTSS SESTEDFQHL SSPTSVLNLR  240
SSEEMQQIQQ PFKSAKPKPE ISETPWWHNG FSTGSGESDD SFPLDTPFLD NYFNESPPEI  300
SIFDQPMGQV FSENDDIFND MFLDGENMMM NIDDELTSSS IKDIGSMFSD FDDSLISDLL  360
VV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21124184364ATERF1
3gcc_A3e-21124184364ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g15440
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401723.10.0ethylene-responsive transcription factor CRF3
SwissprotQ9FK121e-167CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLV4NBA30.0V4NBA3_EUTSA; Uncharacterized protein
STRINGXP_006401723.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-156cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]