PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g15190
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Nin-like
Protein Properties Length: 232aa    MW: 27181.8 Da    PI: 7.4476
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g15190genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.73.5e-26120170252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                ++++++++++k+F+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl
  Tp6g15190 120 QDKLEMSEIRKFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 170
                6799*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.609107192IPR003035RWP-RK domain
PfamPF020422.1E-21123170IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAPSSLRQLD SLKTENQHDA DSLYDMLEKL PPLESLLDTE DLKQDSGLHF QYEYNCFEDF  60
FENSEVNNTI SSDILMLTQE PYFSSDSFSP LAVQNNDCLS SNERREKRTP KKKNTRTKRQ  120
DKLEMSEIRK FFDRPIMKAA KELNVGLTVL KKRCRELGIY RWPHRKLKSL NSLIKNLKGV  180
GMDEEVKNLE EHRVLIEQEP DAELSDGTKK LRQACFKANY KKRKSLANDD YY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g15190
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119842.11e-143PREDICTED: protein RKD4
RefseqXP_013726811.11e-143protein RKD4
SwissprotQ9LVU81e-116RKD4_ARATH; Protein RKD4
TrEMBLA0A078IEW61e-141A0A078IEW6_BRANA; BnaA10g06400D protein
TrEMBLA0A397XRA81e-141A0A397XRA8_BRACM; Uncharacterized protein
TrEMBLM4CFV61e-141M4CFV6_BRARP; Uncharacterized protein
STRINGBra003088.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125852230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.11e-106RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER
    Gene regulatory network models for floral organ determination.
    Methods Mol. Biol., 2014. 1110: p. 441-69
    [PMID:24395275]