PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g14690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 647aa    MW: 70032.4 Da    PI: 5.0061
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g14690genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.11.5e-1132686472374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                +++++e+A+a+++g++e a+++Lar+s++ ++++++ ++l+ +++ AL++r+         a ++s+++e   +e+l +++l++e+sP++k+++++aN a
  Tp6g14690 268 RQTVMEIATAIAEGKTEIASEILARVSQTPNQKRNSEEKLVDFMVTALRSRIKP-------AESTSPATELYGKEHLISTQLLYELSPCFKLGFMAANLA 360
                6889*************************************************9.......334445554559*************************** PP

       GRAS 102 Ileavege....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvakrled 188
                Il+a+ ++      +H+iDf+i++G+Q+++Ll+aL++R+  ++pp ++iT+v +++ g        +e+l+++g+rL+++ ++lg++++fnv+++ rl d
  Tp6g14690 361 ILDAAGNNddegMLMHVIDFEIGEGGQYVNLLHALSTRRsgKNPPVVKITAVTNNTDGfsvagdrGEEKLKAVGDRLSELGDRLGISVRFNVVASLRLGD 460
                *****9998875667*********************99977779**********988899***9999*************************8888**** PP

       GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                l+ e+L ++p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++e++ +y al+ds+e+++p+ +++r+kvE+ 
  Tp6g14690 461 LSRESLGCDPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLDSVESTVPSSNSDRAKVEEG 560
                **************************************************************************************************** PP

       GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +gr++ nvvaceg er+er+e ++kWr+r+++aGF+ +plsek+a+++k+ l++ +    g++v+e++g +++gW++r+L ++SaWr
  Tp6g14690 561 -IGRKLINVVACEGIERIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRLSNGNrvHPGFTVKEDNGGVCFGWMGRTLAVASAWR 647
                .**************************************************9998777789**************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.139241625IPR005202Transcription factor GRAS
PfamPF035145.2E-111268647IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MASGFSGGGG GPEFYGVSGR STPGGPGTVI NSGNNNSQPT YRNQIPGIFL DQIGNRIPGG  60
NIAGKRTLAD FQAAQQQLQH QQQQSFHNQA AINAFLLRSV KPRTFQNLQS STIDLTSVND  120
MNLFSGSSQR YGSQFLPNLR SQTQQQPDFG LYGGIRMGFE SDNQTLAGVP CIEPVQNVNR  180
VGESESMLNS LRELEKQLLD DDDESDAQGG DDDVSVITHS NSEWMQSLVT PDSNPNPNPN  240
PVSSSSPSSS SSSSSPSTAS TTTPVCSRQT VMEIATAIAE GKTEIASEIL ARVSQTPNQK  300
RNSEEKLVDF MVTALRSRIK PAESTSPATE LYGKEHLIST QLLYELSPCF KLGFMAANLA  360
ILDAAGNNDD EGMLMHVIDF EIGEGGQYVN LLHALSTRRS GKNPPVVKIT AVTNNTDGFS  420
VAGDRGEEKL KAVGDRLSEL GDRLGISVRF NVVASLRLGD LSRESLGCDP DEPLAVNLAF  480
KLYRVPDESV CTENPRDELL RRVKGLKPRV VTLVEQEMNS NTAPFLGRVS ESCACYGALL  540
DSVESTVPSS NSDRAKVEEG IGRKLINVVA CEGIERIERC EVFGKWRMRM SMAGFELMPL  600
SEKIAESMKS RLSNGNRVHP GFTVKEDNGG VCFGWMGRTL AVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-3427364624377Protein SCARECROW
5b3h_D9e-3427364624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g14690
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401816.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1J3I7150.0A0A1J3I715_NOCCA; Scarecrow-like protein 8
TrEMBLA0A1J3K8610.0A0A1J3K861_NOCCA; Scarecrow-like protein 8
STRINGXP_006401816.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8